Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0479 ATGACCATTAAGAGTTGTGGCTGCTTTGGAGCCTCAACTACAAAGAAGAAGAAAACTATAACTTCTCATAGTCCCAATGAAATTGATGGCTATCCCTTAGCCAATGTTAGGCAATTCTCTGATAAGGAACTGAGATTGGCAACTGATAATTATCATTCAAACAGTAAGATAGGAAGAGGAGGCTTTGGAACTGTTTTCCAGGGAACCTTAAAAGATGGAAGACAGGTAGCAGTGAAGACCCTTTCAGTTGGATCAAAGCAAGGAGTTCATGAATTCTTGACTGAAATTAAGACATTATCAAATGTTAGACATCCAAACCTTGTTGAATTGGTTGGATTCTGCATTCAAGGACCTAGCCGCACATTAGTCTATGAGTATGTGGAAAATGGCAACCTTGATAGTGCATTACTTGGCACAAGGACTAAGAGAATTAAACTAGATTGGAGAAAAAGATCTGCTATTTGCATAGGTACTGCTAAGGGTCTTGCATTTCTTCATGAGGAAATTGTGCCACATATTGTACATAGAGACATCAAAGCTAGTAATGTACTACTCGACAAAGATTATAATCCGAAAATTGGTGATTTTGGATTGGCAAAGTTATTCCCAGACGACATTACTCACATCAGTACAAAAATTGCTGGAACAACGGGTTACTTAGCACCAGAATATGCATTAGGTGGACAGTTAACCATGAAAGCTGATATATACAGTTTTGGTGTTCTTGTGCTTGAAATCATTAGCGGCAGACGCAGCTCGAGGAGTAACTGGGGAGACTCCAACAAACTCCTATTGGAATGGGCATGGCAACTTCATGAAGAGGGTAAACATTTGGATCTTGTGGATCCAGAGATGGAAGAGTTTCCAGAGGAAGAGGTGATGAAGTACATGAAGGTTGCATTGTTTTGCACACAGTCAGCAGCAAGTAGGAGGCCATTGATGACACAAGTGGTTGACATGCTATCAAAGGAAATCCAGCTGAATGAGAGTCAATTACAACAACCAGGATTCTTCATGGATTCAAATGATGAATCCTCTCGGATCAAGTCAACTTCTGACTCTATAATTCCTAATGTTAGCTCTACTCATAGTTTTACTCAGGTGGCCCCTCGATGA 1116 0.4023 MTIKSCGCFGASTTKKKKTITSHSPNEIDGYPLANVRQFSDKELRLATDNYHSNSKIGRGGFGTVFQGTLKDGRQVAVKTLSVGSKQGVHEFLTEIKTLSNVRHPNLVELVGFCIQGPSRTLVYEYVENGNLDSALLGTRTKRIKLDWRKRSAICIGTAKGLAFLHEEIVPHIVHRDIKASNVLLDKDYNPKIGDFGLAKLFPDDITHISTKIAGTTGYLAPEYALGGQLTMKADIYSFGVLVLEIISGRRSSRSNWGDSNKLLLEWAWQLHEEGKHLDLVDPEMEEFPEEEVMKYMKVALFCTQSAASRRPLMTQVVDMLSKEIQLNESQLQQPGFFMDSNDESSRIKSTSDSIIPNVSSTHSFTQVAPR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0479 371 Pfam Protein tyrosine and serine/threonine kinase 54 321 IPR001245 GO:0004672|GO:0006468
Ahy20g0479 371 MobiDBLite consensus disorder prediction 339 371 - -
Ahy20g0479 371 SMART serkin_6 51 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0479 371 ProSiteProfiles Protein kinase domain profile. 51 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0479 371 PIRSF ILK 9 334 - -
Ahy20g0479 371 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Ahy20g0479 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Ahy20g0479 371 Gene3D Transferase(Phosphotransferase) domain 1 127 344 - -
Ahy20g0479 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 363 - -
Ahy20g0479 371 Gene3D Phosphorylase Kinase; domain 1 22 126 - -
Ahy20g0479 371 SUPERFAMILY Protein kinase-like (PK-like) 35 354 IPR011009 -
Ahy20g0479 371 CDD STKc_IRAK 57 323 - -
Ahy20g0479 371 PANTHER - 2 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0479 Ahy-Chr20 4892767 4895962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0479 39 370 Receptor kinase-like Gene Family AT1G56120 48.795 1.82e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ahy20g0479 PK_Tyr_Ser-Thr 6.40E-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0479 - - gmx:100788143 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0479 20 4892767 4895962 Ahy10g0296 10 2677898 2680452 hybridization
Ahy13g3320 13 130211857 130216183 Ahy20g0479 20 4892767 4895962 PCT
Ahy3g3054 3 127716376 127720693 Ahy20g0479 20 4892767 4895962 PCT
Ahy20g0479 20 4892767 4895962 Ahy13g3320 13 130211857 130216183 PCT
Ahy20g0479 20 4892767 4895962 Ahy3g3054 3 127716376 127720693 PCT