Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0476 ATGTCTGACATCGAAAATCATGCTTCCCTTCGTGGCCGTTCATCGCCCGATAAGGCGTCTGAGCCTGTCTACTTACATATGTGTTGGATGAGATCATTGAGTGTTGTTAAATTATCTCAGCCAATTTCTCGTGGATCTGCTCATGAAAGTTCACGGATGAGAAGGCAAGATGATGAAAGGAAAACCTTTCATGACCGCCATCGCAGAGACCACAAGGTTGGAAGGTTTATGGGGAGGGGTAAATATGACAATTATAATCGGCACAAGAAAAGTGATTATGATAGCTTTCTTCATCTATTTGTCATTTCATATTGGAGAGTTCTTTCATTTTGTAGGCATAATGACCGTGTTTACGATGGAGAAACAAAGCACAAATATGGAGCACATTTAAAGAGATCAAGGAGGAAATCAAGATCAAGATCAAGATCACGATCCAGATCCCCATCTCGGTCTGAATGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTACTGCAGACGTAACACCTGCTGTCTCAGGGCAAATACTGGGTACTGCTCATACGATTCAAGGAACTTCACAAAATTTGTCACCATTTGGAATATCACAGATGGGAACACTTTCTGTAATGCACATTCAACCTATGACACAGCAGGCTACAAGGCATGCCCGGCGAGTTTATGTAGGTGGGCTTCCTCCGTTGACTAATGAACAGACAATTGCAGCATTCTTCAGCCAAGTCATGATTACCATTGGGGGCAATTCTGCTGGAGCAGGCGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTCGCATTTGTGGAGATGAGAACTGTTGAGGAGGCTAGCAATGCAATGGCGTTAGATGGAATAATATTTCAGGGTGTTGCTGTAAGGGTCCGTAGGCCAACAGATTATAATCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCAAGTCCACACCTCAACTTATCTGCCGTTGGACTTGCTATTGGTGCTGTTGGTGGAACTGAGGGACTTGACCGCATTTTTGTGGGTGGGCTTTCATATTGCTTCACTGAAGAACAAATAAGACAATTACTAGAATCTTTTGGTACTCTCCATGCTTTTGATTTAGTTAGGGATAAAGACACTGGACATTCTAAAGGATATGGTTTTTGTACTTATGAGAATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGAGCTACTGTCAGTGGTCATTCTAAAACAGAGCAGGAACACATCTTTGCAAGGGCACAACAGCATATAGCTATCCAGAAAATAGCTTTGGAAGTTGGCGGGTCAAATATTCCTTGGGCAGAAAGAGTGCCAACTACAATTGATGAAACTCCCACTAAAGTGTTATGTTTGACAGAGGCTGTTACTTCTGATCAGTTGAGGGATGATGAGGAATATGAAGAAATATTGGAAGACATGCGGGATGAGTGCCGCAAATTTGGAGCTTTGGTGAATGTTGTTATTCCGCGGCCGAATCCTGGCGGAGAGCTGCCTCCGGGTATTGGAAAGGTGTTCTTGGAATACTCTGATAACGCTGGTTGTTCCGCCGCAAAAAATGCTCTACATGGTAGGAAATTTGGTGGCAATGTTGTGACTGCCGTTTATTATTCTGAAGAGAAGTATCACGGTATGGACTATGGAGTATGA 1701 0.4339 MSDIENHASLRGRSSPDKASEPVYLHMCWMRSLSVVKLSQPISRGSAHESSRMRRQDDERKTFHDRHRRDHKVGRFMGRGKYDNYNRHKKSDYDSFLHLFVISYWRVLSFCRHNDRVYDGETKHKYGAHLKRSRRKSRSRSRSRSRSPSRSECKRTSGFDMAPPTADVTPAVSGQILGTAHTIQGTSQNLSPFGISQMGTLSVMHIQPMTQQATRHARRVYVGGLPPLTNEQTIAAFFSQVMITIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFQGVAVRVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAIGAVGGTEGLDRIFVGGLSYCFTEEQIRQLLESFGTLHAFDLVRDKDTGHSKGYGFCTYENPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAIQKIALEVGGSNIPWAERVPTTIDETPTKVLCLTEAVTSDQLRDDEEYEEILEDMRDECRKFGALVNVVIPRPNPGGELPPGIGKVFLEYSDNAGCSAAKNALHGRKFGGNVVTAVYYSEEKYHGMDYGV* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0476 566 Gene3D - 333 434 IPR012677 -
Ahy20g0476 566 SMART rrm2_1 467 552 IPR003954 GO:0003676
Ahy20g0476 566 SMART rrm2_1 219 297 IPR003954 GO:0003676
Ahy20g0476 566 SMART rrm2_1 339 412 IPR003954 GO:0003676
Ahy20g0476 566 SMART rrm1_1 466 552 IPR000504 GO:0003723
Ahy20g0476 566 SMART rrm1_1 219 297 IPR000504 GO:0003723
Ahy20g0476 566 SMART rrm1_1 339 412 IPR000504 GO:0003723
Ahy20g0476 566 CDD RRM1_U2AF65 217 299 - -
Ahy20g0476 566 Gene3D - 213 314 IPR012677 -
Ahy20g0476 566 SUPERFAMILY RNA-binding domain, RBD 134 298 IPR035979 GO:0003676
Ahy20g0476 566 PANTHER RNA-BINDING PROTEIN 43 565 - -
Ahy20g0476 566 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 43 565 - -
Ahy20g0476 566 MobiDBLite consensus disorder prediction 40 72 - -
Ahy20g0476 566 MobiDBLite consensus disorder prediction 48 65 - -
Ahy20g0476 566 MobiDBLite consensus disorder prediction 127 166 - -
Ahy20g0476 566 CDD RRM2_U2AF65 338 414 - -
Ahy20g0476 566 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 48 564 IPR006529 GO:0003723|GO:0005634|GO:0006397
Ahy20g0476 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 409 IPR000504 GO:0003723
Ahy20g0476 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 416 IPR000504 GO:0003723
Ahy20g0476 566 CDD RRM3_U2AF65 464 552 - -
Ahy20g0476 566 Gene3D - 460 564 IPR012677 -
Ahy20g0476 566 MobiDBLite consensus disorder prediction 127 144 - -
Ahy20g0476 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 301 IPR000504 GO:0003723
Ahy20g0476 566 SUPERFAMILY RNA-binding domain, RBD 339 558 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0476 Ahy-Chr20 4870450 4877266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0476 340 480 Eukaryotic Initiation Factors Gene Family AT1G49760 27.660 1.28e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0476 K12837 - vvi:100243034 662.144