Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0472 ATGTACATAGGAACTTCCATGCGAAGGTCTTTCAAGGATTCCTTGAAAGTCCTTGAAGCTGATATTCAGCACGCCAATACCCTGGCATCAGAGTTTCCAAAGGAGTGTGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACTTGTTTCTTTTCTTGGTGCAATGGGCAGATTGCAATCTTGCTGGAGCACTTGGCTTGTTAAGAATCCTAATTTACAAGGTATATGTGGATGGAACAACTACCATGTCTACTCATGAAAGGAAAGCTAGCATTAGAGAATTCTATGCGGTAATTTATCCGTCTTTGTTACAACTTCAGAAAGGGGTTACAGATTCAGAGGATAAGAAACAGAAGGCTGTTTGTATGGAGAGATATCGAAAAAGAGACGATGAGGATCATCAACAACATTCTGATATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAAGTGAATAGTAAGATTGTGTTGCCTAACTGCCTCCATGCTATGTGCCTGAAATGTTACCGTGAATGGAGAACAAGATCCCAATCATGCCCCTTTTGTCGCGATAGTCTGAAGAGAGTGAACTCGTGCGATCTCTGGGTATTTACCGATAGCCGGGATGTAGTCGACATGGAAACAGTGACAAGGGAGGATATCAAGAGGCTTTTCATGTACATAGATAAGTTGCCCTTGATCATTCCAGACTCGCTTTTCGATCCCTACGACTCTCAACTAAGATAA 747 0.4217 MYIGTSMRRSFKDSLKVLEADIQHANTLASEFPKECDGACLQMRMSYSPAAHLFLFLVQWADCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDSEDKKQKAVCMERYRKRDDEDHQQHSDIDIEREEECGICMEVNSKIVLPNCLHAMCLKCYREWRTRSQSCPFCRDSLKRVNSCDLWVFTDSRDVVDMETVTREDIKRLFMYIDKLPLIIPDSLFDPYDSQLR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0472 248 SUPERFAMILY RING/U-box 141 194 - -
Ahy20g0472 248 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 4 247 - -
Ahy20g0472 248 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Ahy20g0472 248 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
Ahy20g0472 248 PANTHER RING FINGER PROTEIN 41, 151 4 247 - -
Ahy20g0472 248 SMART ring_2 152 189 IPR001841 -
Ahy20g0472 248 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Ahy20g0472 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 213 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0472 Ahy-Chr20 4805876 4808560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0472 151 230 C3H Transcription Factor Family AT2G20030 33.333 5.96e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0472 K25840 - pvy:116126787 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0472 20 4805876 4808560 Ahy10g0289 10 2571409 2574100 hybridization
Ahy13g3330 13 130347470 130351173 Ahy20g0472 20 4805876 4808560 PCT
Ahy3g3060 3 127851983 127855712 Ahy20g0472 20 4805876 4808560 PCT
Ahy20g0472 20 4805876 4808560 Ahy13g3330 13 130347470 130351173 PCT
Ahy20g0472 20 4805876 4808560 Ahy3g3060 3 127851983 127855712 PCT