Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0462 ATGGCAATAGATCACTACTTCTCCAAGGAATGGAAAACCATCCCAAATTCGGCGACCGAGACAGAAAGCTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCGCGAGAACCAGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGATATATCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAGGCTCCGTCTGATAGGAAGGCGTTGTCTCGTGATTTTTTCGTGCCCCCAAGGCCGCCTGCTTCCAGTGCTCAGTCTCTATTGACTGCAAATTCTCAGAGTGGACAACAGCTCCCATATCGAAATCCTTATCAGGGTCGGTATTTAAGCCCTGAGGAGGAAGATGCTGCCACTTCGCAGCTGCTCAATGGTGCTAGCATGAATCCAGGACCCCAACACCCTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGCTAGAGTGTTTGGCAACTCGGAAAACTTGTATGCATACCCAAATTCTTATCAACCCATGACAAGTAATAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGCTTGAACAGAATCTCAATTTTTCTCTTTTGTTGCTTCCTTCTGTGTCTCATTGTCTTCTGA 702 0.4672 MAIDHYFSKEWKTIPNSATETESCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKADISHTTMVPLYGRGQAPSDRKALSRDFFVPPRPPASSAQSLLTANSQSGQQLPYRNPYQGRYLSPEEEDAATSQLLNGASMNPGPQHPSLVGMFGEMFYARVFGNSENLYAYPNSYQPMTSNNSRLRRQEMEADKCLNRISIFLFCCFLLCLIVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0462 233 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Ahy20g0462 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 233 - -
Ahy20g0462 233 MobiDBLite consensus disorder prediction 103 137 - -
Ahy20g0462 233 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Ahy20g0462 233 MobiDBLite consensus disorder prediction 114 135 - -
Ahy20g0462 233 CDD RING-HC_AtRMA_like 28 78 - -
Ahy20g0462 233 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Ahy20g0462 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy20g0462 233 SUPERFAMILY RING/U-box 26 89 - -
Ahy20g0462 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 127 IPR013083 -
Ahy20g0462 233 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0462 Ahy-Chr20 4683220 4685302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0462 13 219 C3H Transcription Factor Family AT4G27470 41.743 2.16e-43 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0462 20 4683220 4685302 Ahy10g0279 10 2520374 2522350 hybridization
Ahy13g3338 13 130410657 130412397 Ahy20g0462 20 4683220 4685302 PCT
Ahy3g3070 3 127918213 127919941 Ahy20g0462 20 4683220 4685302 PCT
Ahy20g0462 20 4683220 4685302 Ahy13g3338 13 130410657 130412397 PCT
Ahy20g0462 20 4683220 4685302 Ahy3g3070 3 127918213 127919941 PCT