Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0446 ATGGAGAACAAGCACCACCCTGATTCTACTTGCTCCACCAGAACTGAGAGAAAGTTCATTGAGAGAGAAAGAAGAAACCAAATGAAGGCACTCTACTCCAACCTCAATTCTCTTCTCCCTCCTCAAACCTCAAGGGAGAGAATTTCTTCGCTGCCGGATCAGCTAGAGGAAGCCACAAACTACATAAAGAAGTTACAGGTGAAGCTGGAGAAAATGAAGGAAAAGAAGAACACATTATTAGGAACAATTCATCAAATACCAAATAATAGAGGCATATTAGGAAACGGTGGTAGTGGCAATAATAATAATGTTATTGGGATTAGATCTCCACAAATTGAGATCCAACAAATGGGATTCACCTTAATGGTTGTTCTCATAACTGCCTTGGATTCTCATTATTTCATGTTCATTGAGGCCATTCGTGTTCTTCATGAAGAAGGTGCAGATGTTGTTAGCGCCAGTTACAAGGTTGTTCAACATGCTGTTTTCCATACAATGCACTGTCAGGTAGGGGAGTATGGCAATGGAGCTGCTGCGAGGATATCAGAGAGACTGAAGAAGTTTGTGAATGATTCTACTTATTGTCCCTTTTAG 594 0.4074 MENKHHPDSTCSTRTERKFIERERRNQMKALYSNLNSLLPPQTSRERISSLPDQLEEATNYIKKLQVKLEKMKEKKNTLLGTIHQIPNNRGILGNGGSGNNNNVIGIRSPQIEIQQMGFTLMVVLITALDSHYFMFIEAIRVLHEEGADVVSASYKVVQHAVFHTMHCQVGEYGNGAAARISERLKKFVNDSTYCPF* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0446 197 Pfam Helix-loop-helix DNA-binding domain 14 66 IPR011598 GO:0046983
Ahy20g0446 197 Gene3D - 7 90 IPR036638 GO:0046983
Ahy20g0446 197 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 191 IPR015660 GO:0003700|GO:0006357
Ahy20g0446 197 PANTHER TRANSCRIPTION FACTOR BHLH162 10 191 - -
Ahy20g0446 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 86 IPR036638 GO:0046983
Ahy20g0446 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 65 IPR011598 GO:0046983
Ahy20g0446 197 Coils Coil 55 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0446 Ahy-Chr20 4486504 4488257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0446 6 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 45.699 1.33e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy20g0446 HLH 9.30E-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0446 - - gmx:100784418 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0446 20 4486504 4488257 Ahy10g0266 10 2378863 2380644 hybridization