Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0438 ATGGATTTTAATTGGGACGCTGAGCACATATTTCGACTGTATGTGCATGATTATATGGTGAAAAGAGGAATGCACAAAACCGCTGAGATTTTCAGGAAGGAATGCAATCTGACTGACACTGCTGTTACACTTGATTCTCATGATGGGTTCTTGCTCGAATGGTGGTCTGTTTTCTATGAGATATATATGTCTAGGGCTAGACTAGCGAAGGATCAGGCGACTGGGGCAGAATCTTCTGGGAAGGTCCCAGGAACTACATGTAATGCCGGAATTAGTGTCCCTCCAATCCCTCGATCATCCATGAGTGAGCAGAGACCTGACCAACGTCAAGTCAACGCCAGATATAACAGGATGATGGCACAACCAGCTGCATGTGTACTACAATCTACTCTGAATGCAAAAGAGCATCCTGGATATATGACTGTAGATGCCGCCAGAGCAAACAATTTGAAGCTGGCTGTGACCAATTCAAATAATTCGCTGCAAGATGTAGGGAATAATGCTCAGAGGGAAGCTTTTAAGGATATTTGCATCGGAAGGGACGTATCTAGGGACCCTCTAGATGTAGCCCAAAGGACATTGCAACATAAACCAAATACTGGTGAATCTTTCAATCGAATGCCAATTAACGGTTGGCCAGTAAATAACCAAGTATTAACCTCATTTTTGCGAGCACCAAACTATCAACAGCAATTTCAAGCGCAGACAATGCAAAATCCGGAAGCAATTCCTGCTGATGTACGTGCAGGTAGTCCTAAAAGTCAGAGTTTCCCAGTTCCTGGAAACTCTGTTGAGTGCAACAATCATCACACAAAGGTTTCCGAGGCTGAATTAAGCATAAAGGATAAGCAGACAATGGACCCAATGATTAGGGATCAGCAACCACAGATGCAGTCTCAGAATGTTGAGAAGAGCAAAAAGAGAAAGGCAACGATACCCTTGAGGACTGGAGAAAGTGCCATGGATTGTGTAGATGCAGAAGATGGAAAGCCTATGGATGAAAGTGTGGAGTCTTTCCTGTCATTCGAAAATGAACATGCTGATCATAGAGTTGTGCCTTTCAGCAATCTGACTCGTATTTCAGCTGCACATGGTAAAAATGAAAATAAAGGTTTTTCATTTGAAGAAGTCAGTTGCCTTCACTCAAGCAAAAACAAGGTTTTATCCACCCATTTTTCATGGGATGGAAAGGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAACCCTTAATTGTGTTACTACTACAGAAGGACATTCACATCTCATTACAGATGTTCGGTTTAGGCCAAGTTCTACTATATTTGCAACATCTTCCTTTGACCGATCTATAAAACTTTGGGATGCAGCCAGACCCGACAAGTCATTATTCCAACTCGACGGTCATGCCGACCAAGTAATGTCATTGGACTTCCATCCAAGGAAGCCTGCCATTCTTTGTTCATGTGATAGCAATGACATAATTCGTCTGTGGGATATCAATCAGCGTACCTGCTTGCATACTACTAAGGGAGGCGCTAATAAACAAGTCAGGTTCCAGCCTCGTACTGGGAAGTTTCTGGCTGCTGTGTCCGGAAATAATATCAAGATAGTTGATTTTGAGAGCAATAGATTTCTGTACCACCTAAAGGGTCATGTCAAAGATGTTCTTTCCATTTGTTGGGACATGAGTGGAAACTATGTTGCCTCCGTCAGTGAAGATTGTGCACGTGTCTGGTCTGTTGCAGATGGAAAATGTATAAGTGAATTGAATTCCACTGGGAACAAGTTCCAATCGTGTGTATTTCATCCAGGATATCATAATCTCTTAGTAATTGGTGGCTATGAGTCCCTGGAATTGTGGTGTACAACAGAGAGCAGTAAAACATTGACAGTTCCTGCACACAAGGGACTAATTGCTGGACTAGCACATTCACCCCAAGATGAAATGATTGCCTCAGCTAGCCATGATCATTGCGTGAAACTCTGGAAATAA 1992 0.4267 MDFNWDAEHIFRLYVHDYMVKRGMHKTAEIFRKECNLTDTAVTLDSHDGFLLEWWSVFYEIYMSRARLAKDQATGAESSGKVPGTTCNAGISVPPIPRSSMSEQRPDQRQVNARYNRMMAQPAACVLQSTLNAKEHPGYMTVDAARANNLKLAVTNSNNSLQDVGNNAQREAFKDICIGRDVSRDPLDVAQRTLQHKPNTGESFNRMPINGWPVNNQVLTSFLRAPNYQQQFQAQTMQNPEAIPADVRAGSPKSQSFPVPGNSVECNNHHTKVSEAELSIKDKQTMDPMIRDQQPQMQSQNVEKSKKRKATIPLRTGESAMDCVDAEDGKPMDESVESFLSFENEHADHRVVPFSNLTRISAAHGKNENKGFSFEEVSCLHSSKNKVLSTHFSWDGKVLASAGHEKKVFIWNMETLNCVTTTEGHSHLITDVRFRPSSTIFATSSFDRSIKLWDAARPDKSLFQLDGHADQVMSLDFHPRKPAILCSCDSNDIIRLWDINQRTCLHTTKGGANKQVRFQPRTGKFLAAVSGNNIKIVDFESNRFLYHLKGHVKDVLSICWDMSGNYVASVSEDCARVWSVADGKCISELNSTGNKFQSCVFHPGYHNLLVIGGYESLELWCTTESSKTLTVPAHKGLIAGLAHSPQDEMIASASHDHCVKLWK* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0438 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 454 IPR001680 GO:0005515
Ahy20g0438 663 CDD WD40 382 663 - -
Ahy20g0438 663 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 39 IPR006594 GO:0005515
Ahy20g0438 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 454 - -
Ahy20g0438 663 SUPERFAMILY WD40 repeat-like 374 663 IPR036322 GO:0005515
Ahy20g0438 663 Gene3D - 514 663 IPR015943 GO:0005515
Ahy20g0438 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 465 507 IPR001680 GO:0005515
Ahy20g0438 663 ProSitePatterns Trp-Asp (WD) repeats signature. 485 499 IPR019775 -
Ahy20g0438 663 MobiDBLite consensus disorder prediction 78 108 - -
Ahy20g0438 663 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 663 IPR044716 GO:0003714
Ahy20g0438 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 631 663 - -
Ahy20g0438 663 MobiDBLite consensus disorder prediction 76 108 - -
Ahy20g0438 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 421 IPR001680 GO:0005515
Ahy20g0438 663 Gene3D - 265 513 IPR015943 GO:0005515
Ahy20g0438 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 465 500 - -
Ahy20g0438 663 SMART WD40_4 541 579 IPR001680 GO:0005515
Ahy20g0438 663 SMART WD40_4 582 621 IPR001680 GO:0005515
Ahy20g0438 663 SMART WD40_4 458 498 IPR001680 GO:0005515
Ahy20g0438 663 SMART WD40_4 415 454 IPR001680 GO:0005515
Ahy20g0438 663 SMART WD40_4 501 538 IPR001680 GO:0005515
Ahy20g0438 663 SMART WD40_4 373 412 IPR001680 GO:0005515
Ahy20g0438 663 SMART WD40_4 622 663 IPR001680 GO:0005515
Ahy20g0438 663 Pfam LisH 14 34 IPR006594 GO:0005515
Ahy20g0438 663 Pfam WD domain, G-beta repeat 417 454 IPR001680 GO:0005515
Ahy20g0438 663 Pfam WD domain, G-beta repeat 629 663 IPR001680 GO:0005515
Ahy20g0438 663 Pfam WD domain, G-beta repeat 462 498 IPR001680 GO:0005515
Ahy20g0438 663 Pfam WD domain, G-beta repeat 544 578 IPR001680 GO:0005515
Ahy20g0438 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 663 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0438 Ahy-Chr20 4438004 4443346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0438 397 662 Miscellaneous Gene Families AT5G08390 25.000 3.19e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ahy20g0438 WD40 0.0028 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0438 - - gsj:114387334 805.438