Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0437 ATGGCTTCTATCACTTCTTCCCTCTCCTCTCTCTCCCTCCACTCTCACACATCTTCTACTGCTGCTTCTTCACGTTTCTCTCTCCTGCCCGCTTCCAAACTCACCTTCAATTTCGCCGCCGCACGCCCCCGCACACTAACCCTCGCCGCCGCAAAATCCAAGCCCTCCGATGACATCGACACCTCGTTCTTCGACAACGTGAACCCAGAAGAGGAGGTCCCCTTCAACCCCCCAGAGGCCCCGGAAGGGTTCGTGGCCCCACCTTCGTTCGACGAAGGGCCAATGGAAACGGAAGACGAAATAGCCGCCGCATACGAAGAATTGTACGGACCGGCGTACAGTGGCGTGAGCGTTCTGGGAAACGACATATACGTGATGGACTCGAAGATGAAGAAGGATACTGGGTTCGGGTCGAAGGCGAAGAAGGAGAAGGTGAAGGATGGGTTCGAGGAGAGGGTGGTGCAGGTGAGGAGGGTGACGAAGGTGGTTAAGGGAGGAAAGCAGCTGAGGTTCAGGGCGGTGGTGGTGGTCGGAGACAAGAAGGGGAATGTGGGTGTGGGTGTTGGAAAGGCCAAAGAGGTCATTGCTGCTGTTCAGAAGTCTGCTGTTAATGCAAGGAGGAATATCATCACTGTTCCTTTGACTAAGTACTTGACTTTTCCACACAGAGCTGATGGAGATTATGGAGCAGCCAAGGTGATGCTGAGGCCTGCATCACCGGGTACCGGAGTGATTGCTGGTGGGGCGGTGAGGATTGTTCTTGAGATGGCCGGAGTTGAGAATGCTCTGGGAAAGCAACTCGGCAGCAACAATGCACTCAACAATGCCAGGGCAACTGTTGCTGCTGTTCAGAAAATGAAGCAGTTCCGTGAGGTTGCCCAAGAGCGTGGCATTCCAATGGAACAACTCTGGCAATGA 918 0.5436 MASITSSLSSLSLHSHTSSTAASSRFSLLPASKLTFNFAAARPRTLTLAAAKSKPSDDIDTSFFDNVNPEEEVPFNPPEAPEGFVAPPSFDEGPMETEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKMKKDTGFGSKAKKEKVKDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGNVGVGVGKAKEVIAAVQKSAVNARRNIITVPLTKYLTFPHRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVAAVQKMKQFREVAQERGIPMEQLWQ* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0437 305 ProSiteProfiles S5 double stranded RNA-binding domain profile. 149 212 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy20g0437 305 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 5 305 - -
Ahy20g0437 305 Hamap 30S ribosomal protein S5 [rpsE]. 130 302 IPR005712 GO:0003735|GO:0006412|GO:0015935
Ahy20g0437 305 Gene3D - 216 304 IPR014721 -
Ahy20g0437 305 Pfam Ribosomal protein S5, C-terminal domain 226 296 IPR005324 GO:0003735|GO:0005840|GO:0006412
Ahy20g0437 305 SUPERFAMILY Ribosomal protein S5 domain 2-like 219 297 IPR020568 -
Ahy20g0437 305 ProSitePatterns Ribosomal protein S5 signature. 166 198 IPR018192 -
Ahy20g0437 305 SUPERFAMILY dsRNA-binding domain-like 146 214 - -
Ahy20g0437 305 Coils Coil 300 305 - -
Ahy20g0437 305 Gene3D - 139 210 - -
Ahy20g0437 305 TIGRFAM rpsE_bact: ribosomal protein uS5 147 301 IPR005712 GO:0003735|GO:0006412|GO:0015935
Ahy20g0437 305 PANTHER RIBOSOMAL S SUBUNIT 5 305 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy20g0437 305 Pfam Ribosomal protein S5, N-terminal domain 149 213 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0437 Ahy-Chr20 4436617 4438194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0437 149 289 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.544 7.33e-17 77.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0437 20 4436617 4438194 Ahy20g0437 20 4436617 4438194 ECH