Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0436 ATGAAGTTCAACATTGCAAATCCCACCACTGGATGCCAAAAGAAGCTCGAGATCGATGATGATCAGAAGCTGCGAGCATTTTGGGACAAGAGAATCTCACAAGAGGTTCTTGGTGATGCTTTGGGTGAGGAATTTAAAGGCTATGTTTTCAAGATTACTGGAGGTTGTGATAAACAGGGATTTCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTCCATAGAGGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGCGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGACAATGATTTACCAGGCCTGACAGACATTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCCTCCAAAATCCGCAAGCTGTTCAACCTTTCCAAGGAAGATGATGTAAGGAAGTATGTCAACACATACAGGAGGACATTCACAACCAAAAATGGGAAAAAGGTGAGTAAAGCTCCAAAGATACAAAGGTTGGTGACTCCCCTGACACTTCAAAGGAAGAGGGCAAGAATTTCTGATAAGAAGAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCAGAGTACCAGAAACTCCTTGCCTCAAGGTTGAAGGAGCAAAGGGAACGCCGTAGTGAGAGTTTGGCTAAGAGGAGATCAAAGCTCTCCAGTGCTGCTGTTAAACAAGCTTCCTCTGCATAG 753 0.4622 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARISDKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAAVKQASSA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0436 250 MobiDBLite consensus disorder prediction 219 250 - -
Ahy20g0436 250 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy20g0436 250 MobiDBLite consensus disorder prediction 219 235 - -
Ahy20g0436 250 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy20g0436 250 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Ahy20g0436 250 Coils Coil 189 216 - -
Ahy20g0436 250 PANTHER 40S RIBOSOMAL PROTEIN S6 1 243 - -
Ahy20g0436 250 PIRSF RPS6e 1 250 IPR014401 GO:0003735|GO:0005840|GO:0006412
Ahy20g0436 250 PANTHER 40S RIBOSOMAL PROTEIN S6 1 243 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy20g0436 250 Gene3D - 133 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0436 Ahy-Chr20 4433833 4435776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0436 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.084 2.08e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0436 K02991 - gmx:100800507 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0436 20 4433833 4435776 Ahy10g0257 10 2329433 2331789 hybridization
Ahy13g3354 13 130617543 130619524 Ahy20g0436 20 4433833 4435776 PCT
Ahy3g3087 3 128224153 128226120 Ahy20g0436 20 4433833 4435776 PCT
Ahy20g0436 20 4433833 4435776 Ahy13g3354 13 130617543 130619524 PCT
Ahy20g0436 20 4433833 4435776 Ahy3g3087 3 128224153 128226120 PCT