Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0431 ATGGGAGATAGTAGTTGGGGCGAGAGAAAGAGCATGAAGTACAATGAAGAAGAAGAGGAAGATGAAGAATACCAAGACGAAGATGAAGGAAAAAAGAAGAGAGTAGTAGTGGTGAGCAGCAACAAGAGAGCATCATCATCATCATCATGTAATTGTCAAGTGGATGGTTGCAATGCAGATCTAAGCATTGCAAAGCAGTATCACAAGCGCCATAAGGTGTGTGAGTACCATGCTAAGGCTCACTCGGTTCTCATCTCTCAACAACACCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACACAATGAGAGGCGTCGCAAAAATTCATCAGATTGCCAAGGATAA 399 0.4286 MGDSSWGERKSMKYNEEEEEDEEYQDEDEGKKKRVVVVSSNKRASSSSSCNCQVDGCNADLSIAKQYHKRHKVCEYHAKAHSVLISQQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNSSDCQG* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0431 132 Pfam SBP domain 52 125 IPR004333 GO:0003677
Ahy20g0431 132 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 4 126 IPR044817 GO:0003677
Ahy20g0431 132 MobiDBLite consensus disorder prediction 1 32 - -
Ahy20g0431 132 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 4 126 - -
Ahy20g0431 132 Gene3D - 42 113 IPR036893 GO:0003677|GO:0005634
Ahy20g0431 132 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Ahy20g0431 132 SUPERFAMILY SBT domain 51 129 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0431 Ahy-Chr20 4355353 4356806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0431 45 129 SBP-box Gene Family AT2G33810 74.118 5.30e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy20g0431 SBP 1.70E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0431 - - adu:107468295 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0431 20 4355353 4356806 Ahy20g0431 20 4355353 4356806 ECH
Ahy20g0431 20 4355353 4356806 Ahy13g3357 13 130693461 130695245 ECH
Ahy18g1382 18 26016464 26017843 Ahy20g0431 20 4355353 4356806 ECH
Ahy18g0917 18 11463805 11465055 Ahy20g0431 20 4355353 4356806 ECH
Ahy20g0431 20 4355353 4356806 Ahy10g0253 10 2261111 2262384 hybridization
Ahy13g3357 13 130693461 130695245 Ahy20g0431 20 4355353 4356806 PCT
Ahy3g3091 3 128272479 128274248 Ahy20g0431 20 4355353 4356806 PCT