Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0427 ATGGCATCTTCTTCTCCTTCTTCTTCAGCTTCTCGTGAGGGACACTACAGAGGGGTTAGGAAGAGGCCATGGGGACGTTACGCTGCTGAGATACGCGATCCTTGGAAGAAGACACGTGTATGGCTTGGTACCTTCGATACTCCTGAAGAAGCCGCCCTAGCTTACGACGGTGCCGCGCGTTCTCTCCGTGGTGCTAAGGCCAAGACTAACTTCCCCCCGGCTCCGGTCGCCGCTGCCGGAGGAATCTGTCTCGACCTCAACGTTAACGCTCCTAACTCTGATCATCATCGCTGGCCCTCCGTACCGGTTCGCGCCGGCGTTGGCGGTGGTGGAATCTTCGGCGAGTTTCTCCACACTCGCGTTCTCAAGGACGTTGATCTGGCTCATCAACCGCATCAGCCGCCTCCGCCACATCCGATTCATCATGCGGCGGCGTTAGCAGCTCATCACCACAGACGCGGCGAGGTGACAGTAGCGGTTGCCGGAGGAGGAGTGGAGCAGGTGGCGGGGAGTGGTTCAACGGCATCGTATCTAGGGCTTGTTCGGCGCGGGATCCCGATCGATCTGAACGAGCCTCCACCTTTGTGGCTTTGA 594 0.5892 MASSSPSSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAAAGGICLDLNVNAPNSDHHRWPSVPVRAGVGGGGIFGEFLHTRVLKDVDLAHQPHQPPPPHPIHHAAALAAHHHRRGEVTVAVAGGGVEQVAGSGSTASYLGLVRRGIPIDLNEPPPLWL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0427 197 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Ahy20g0427 197 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Ahy20g0427 197 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Ahy20g0427 197 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Ahy20g0427 197 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Ahy20g0427 197 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Ahy20g0427 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 131 - -
Ahy20g0427 197 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Ahy20g0427 197 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Ahy20g0427 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 10 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0427 Ahy-Chr20 4317302 4319174 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0427 7 197 AP2-EREBP Transcription Factor Family AT1G28360 45.411 5.64e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy20g0427 AP2 3.30E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0427 - - aip:107624305 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0427 20 4317302 4319174 Ahy20g0427 20 4317302 4319174 ECH
Ahy20g0427 20 4317302 4319174 Ahy10g0249 10 2237170 2238986 hybridization