Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0409 ATGGACCATGCCAAGATTGCTTATGATTTAGTCATGGTGGCTCTATCCATATCTCTTATAGTTCTTGGTGTTGTTCTGTTTCTTGCATGCAAGAAAAAGCCGGTTGAATCCGAGGAAACACTTCCGGTAAAATTTTGTGCTCGTGCATACCCTTTAATGGAACTTGATGCTGCCACTGATGGCTTCAACCATAGGAGAATTGTTGGCCAGGGTCGCCTAGGAACAGTTTACGCCGCAACGCTATCGAATGCAGAGGTTGTAGCTGTGAAGAGGATCCACCCTTTTCTTGTTTTGAGCAATGCAGGCTTTGGATTCTCATCTGTGTTGAAGTGGCTCTCATTGGCACAACACCCCAACGTTGTTCCAATCATAGGATTCTCCGAAGCGCCAGGGGAAAGAGTTGTAGTCATGGAGTTTATCCGAATGGCGAGCTTGGAATTCTATTTACAACAAAACCAAGATGGTGTTTCACTTCTGGATTGGAGCAAGAGGTTTAGAATTGCAGCAGGTGTAGCTAGAGGGCTTCAATACCTGCATGAAGTGGTAGCACCAAACATAGTACATGGTTGTGTTAAGTCTTCTAATGTTCTTATTGATGTGAATTTCTGTGCCAGGGTTTGTGATTATGGACTTAACTTCTTGGCACCAATGGAGAAGAGAGGGGTAGTGGGGTATGTGGATGGTGAGTATTGGAATGAGAGAGGGCGTGGTGCTACTAAAGAGAGTGATGTTTATGGTTTAGGTGTGGTGCTTTTGGAGCTTCTAAGTGGAAGAGGGTGTGAGGGAGGGTCATTGGCAAATTGGGCATTGCCTTTGATTAAGGAAATGAGTTTTGGTCAAGTTTTAGATCCCAGGCTTGTGACTCCTTCTGATATGAGTCCTTTGGTTAGATTGGCCAAAGTTGCTTCTGCTTGTGTTGGTAATCCAAGAAAGTGTAGGCCTAGTGTTGCTCAAGTTGCTACCATTTTGAACGATTTAGAAATACAAGTGTGTGGAAACTCAGTTGCAGTCGACTTCACGTGA 1023 0.4428 MDHAKIAYDLVMVALSISLIVLGVVLFLACKKKPVESEETLPVKFCARAYPLMELDAATDGFNHRRIVGQGRLGTVYAATLSNAEVVAVKRIHPFLVLSNAGFGFSSVLKWLSLAQHPNVVPIIGFSEAPGERVVVMEFIRMASLEFYLQQNQDGVSLLDWSKRFRIAAGVARGLQYLHEVVAPNIVHGCVKSSNVLIDVNFCARVCDYGLNFLAPMEKRGVVGYVDGEYWNERGRGATKESDVYGLGVVLLELLSGRGCEGGSLANWALPLIKEMSFGQVLDPRLVTPSDMSPLVRLAKVASACVGNPRKCRPSVAQVATILNDLEIQVCGNSVAVDFT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0409 340 PIRSF ILK 28 334 - -
Ahy20g0409 340 Pfam Protein tyrosine and serine/threonine kinase 65 320 IPR001245 GO:0004672|GO:0006468
Ahy20g0409 340 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Ahy20g0409 340 Gene3D Transferase(Phosphotransferase) domain 1 141 334 - -
Ahy20g0409 340 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 3 332 - -
Ahy20g0409 340 ProSiteProfiles Protein kinase domain profile. 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0409 340 Gene3D Phosphorylase Kinase; domain 1 28 139 - -
Ahy20g0409 340 SUPERFAMILY Protein kinase-like (PK-like) 38 323 IPR011009 -
Ahy20g0409 340 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0409 Ahy-Chr20 4150726 4152145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0409 47 333 Receptor kinase-like Gene Family AT3G59420 39.203 2.96e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ahy20g0409 PK_Tyr_Ser-Thr 7.90E-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0409 - - adu:107468261 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0409 20 4150726 4152145 Ahy20g0409 20 4150726 4152145 ECH
Ahy20g0409 20 4150726 4152145 Ahy10g0226 10 2065876 2067159 hybridization