Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0408 ATGGCATGGTGCAATGACACTCATGAGAAAGAGATAATTGCTTCCAATAATAGTACTATTACTCTTAGACCTAAATCCGACCCAAACGTAACTTGCCCCTCATGTGGCCATAACATTCAAATAATCCAAGAGCAGGGTGGAATTCATGAGTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGACCCAAATGACATTGAAATATTGGAGCATTTGGAGGCAAAAGTTATGTCTCATGTGCCCAACCTTCATCCTCTCATTGATGAGTTCATACCAACACTTCAAGACGAGAATGGCATCTGTTATACACACCCAGAGAAGCTACCAGGAGTAAAGAAAGATGGGCAGATCCGGCACTTCTTCCACAGGCCTTCAAAAGCATACACAACAGGAACAAGGAAGAGAAGAAAGGTTCACACCGATGAAGATGGAAGCGAAACAAGGTGGCACAAAACCGGAAAAACAAGACCGGTGGTGGCCGGCGGCGGCCTAGTGAAGGGTTTCAAGAAGATTCTAGTACTATACACCAACTATGGGAGGCAAAAAAAGCCTGAGAAAACTAACTGGGTGATGCATCAATACCATCTTGGAAGCAATGAAGAAGAGAGAGATGGAGAACTAGTAGTTTCAAAAGTGTTCTACCAAACACAACCTAGACAATGCGGCAATTCCATTGTTATAAAGGAAGATAATGATGATGATCTTCCCTATGGAAAGATATTGATGATGAATAACAGTAGTAAGAAGCACAAAAATAATAACGATAGAAATGTTGCTGCTCCTGTTGTGGACTACTACATCAACTATGACCATGTTGATCATCATAATCACAATCATAATAGTCAAAGATGTTCATCACCTACTCAACTTATTCCAAACTTGGTTCTCCAAGGTGATTCCTCTTCTCTTTTTCGCTTTGCTTCATCATCACTCGATGGGAATACCAACAAAACAAGACTTTTTGAGAGAAAGTTGTAG 975 0.4123 MAWCNDTHEKEIIASNNSTITLRPKSDPNVTCPSCGHNIQIIQEQGGIHELPGLPAGVKFDPNDIEILEHLEAKVMSHVPNLHPLIDEFIPTLQDENGICYTHPEKLPGVKKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTGKTRPVVAGGGLVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEERDGELVVSKVFYQTQPRQCGNSIVIKEDNDDDLPYGKILMMNNSSKKHKNNNDRNVAAPVVDYYINYDHVDHHNHNHNSQRCSSPTQLIPNLVLQGDSSSLFRFASSSLDGNTNKTRLFERKL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0408 324 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 300 - -
Ahy20g0408 324 Pfam No apical meristem (NAM) protein 55 195 IPR003441 GO:0003677|GO:0006355
Ahy20g0408 324 Gene3D NAC domain 64 218 IPR036093 GO:0003677|GO:0006355
Ahy20g0408 324 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 300 IPR044799 GO:0003700
Ahy20g0408 324 ProSiteProfiles NAC domain profile. 54 214 IPR003441 GO:0003677|GO:0006355
Ahy20g0408 324 MobiDBLite consensus disorder prediction 133 148 - -
Ahy20g0408 324 SUPERFAMILY NAC domain 49 214 IPR036093 GO:0003677|GO:0006355
Ahy20g0408 324 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0408 Ahy-Chr20 4143240 4146127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0408 1 236 NAC Transcription Factor Family AT4G28500 68.443 6.12e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy20g0408 NAM 3.50E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0408 - - gmx:100795920 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0408 20 4143240 4146127 Ahy20g0408 20 4143240 4146127 ECH
Ahy20g0408 20 4143240 4146127 Ahy13g3382 13 131062332 131066377 ECH