Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0404 ATGATCTCTCTCCCAAAGAAAGGAAGCGTGGTTGTGTACTTACCACAAGGCCACTTTGAACAGGCTCAGGATTTTCCCGTCACTGCCTATAACATCCCACCTCATGTCTGCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGCAGTGATGAAGTCTATTGCCAGGTCTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGAAAAACTTGCGGCATGGGGTAGTTGATGCTGATGGTGAAGAAGATGATACTGAAGCTGTGGTGAAGTCAACAACACCCCATATGTTTTGCAAGACTCTTACTGCTTCTGACACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAGAGGCCTTCACAAGAGCTTGTGGCGAAGGATTTGCATGGCCTTGAATGGAGGTTTAGACATATATACAGAGGGCAGCCACGGAGACATTTGCTCACAACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTGTTATTCCTTAGGGGTGACGATGGAGAATTAAGACTAGGGATTCGTAGGGCTGCTCAGTTGAAGAATGGTGGTATCTTTGCCACTCCTTCTATTCAGCAACTGAATCCTGGCTCAGTCATGAATATTATTAATGCTTTGTCTTCGAGAAGTGCCTTTAGTGTTTGCTATAATCCAAGGGTGAGCTCCTCGGAATTCATCATACCGCCCCACAAATTTTTAAAGAGCCTTGATTTTTGTTATTCAGTTGGAATGAGGTTCCAGATGCGCTTCGAAACTGAAGATGCTGCAGAGCGCAGATTCACTGGATTAATTGCTGGCATTGGTGATGCGGATCCAGTTAGATGGCCAGGTTCAAAATGGAGATGCCTTCTGGTAAGGTGGGATGATGTTGAAGCAGGTAGGCATAACAGGGTTTCCCCATGGGAGATTGAGCCATCTGGGCCTGCTCCTACTTCCAATAACTTGATGGCAGCCGGTTTGAAGAGGAGCCGAATTGGATCTTCAGGGAAACTAGAATTTCCACTTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTGAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACCCCTTATGATGGTATTAATTCTCAGAGTCCAAGGTTATCCGAGTTAGGGAGGTGTTATCCTGGTTCTATTGGTTCTGGGACATCGGTTGTAGGAAGTAATATCAGAATCCCTCAAGCCGGCTCTGATTTTTCCTACAACAATGGCACAGGCTTTGGGGAATCATTCCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCCAACCATATGGAAGGGCCTTGTCTTTTGATGAGGCTCGCACAAATGGTCGCTTTGGACTTTTTGATGGTTATCATCTGGTTAGCCCCAGAAATGGATGGTCAACCCAGGTGCATGACAATCCATCACATCTGCATGCATCTGTAGCATCAATGCAAGTGTCGTCTCCTTCATCTGTGTTAATGTTCCAGCAAGTGGTTAATCCTCTTTCAAACTCTGATTATGATAAAAAGAGTAACCAGGAGATAGAGGGTACAGTCCATTACCGGCGTCCCTATGCAACTGAAGTGAAAGGTGGAACATTTGCATCGTTCCCAACTGATGAGCCTATTTTCTCTGGAAGAGCTAAGGAAGATATGAACTCCCTTGGCATGTTTAACTTCCATAATCAGTTGGGCACTTCAAAGTCTGTTGAATCAGCATTGACAATGAGAGAAAGTCAAGAGTTGGCATCTTCGTGTAAAAGTAGCTGCAGACTCTTCGGATTCTCTTTAACCGAGGACCCTCACATTGCAAACAAGGAGGCTGACCGACCTTTGATCACTCGGCAATTGAGTTCAGTCCCTACATTTACTCAACACGCCGAAGATAGTTTTCCTCCCGGCCATTCTCTCAGGACTAAAGCTGTTGAGAGTAACTTCACCAAAGGTGTGTTGCAGTGTTGA 2025 0.4553 MISLPKKGSVVVYLPQGHFEQAQDFPVTAYNIPPHVCCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEKNLRHGVVDADGEEDDTEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKNGGIFATPSIQQLNPGSVMNIINALSSRSAFSVCYNPRVSSSEFIIPPHKFLKSLDFCYSVGMRFQMRFETEDAAERRFTGLIAGIGDADPVRWPGSKWRCLLVRWDDVEAGRHNRVSPWEIEPSGPAPTSNNLMAAGLKRSRIGSSGKLEFPLPNGIGTSDFGESLRFRKVLQGQEILGVNTPYDGINSQSPRLSELGRCYPGSIGSGTSVVGSNIRIPQAGSDFSYNNGTGFGESFRFQKVLQGQEIFPSQPYGRALSFDEARTNGRFGLFDGYHLVSPRNGWSTQVHDNPSHLHASVASMQVSSPSSVLMFQQVVNPLSNSDYDKKSNQEIEGTVHYRRPYATEVKGGTFASFPTDEPIFSGRAKEDMNSLGMFNFHNQLGTSKSVESALTMRESQELASSCKSSCRLFGFSLTEDPHIANKEADRPLITRQLSSVPTFTQHAEDSFPPGHSLRTKAVESNFTKGVLQC* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0404 674 Gene3D - 261 331 - -
Ahy20g0404 674 SMART B3_2 97 199 IPR003340 GO:0003677
Ahy20g0404 674 Pfam Auxin response factor 225 304 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy20g0404 674 Gene3D - 95 199 IPR015300 -
Ahy20g0404 674 CDD B3_DNA 95 197 IPR003340 GO:0003677
Ahy20g0404 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy20g0404 674 Pfam B3 DNA binding domain 97 198 IPR003340 GO:0003677
Ahy20g0404 674 PANTHER AUXIN RESPONSE FACTOR 1 673 - -
Ahy20g0404 674 SUPERFAMILY DNA-binding pseudobarrel domain 90 203 IPR015300 -
Ahy20g0404 674 ProSiteProfiles B3 DNA-binding domain profile. 97 199 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0404 Ahy-Chr20 4112047 4116834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0404 96 454 B3 DNA Binding Superfamily AT2G33860 59.780 8.17e-144 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy20g0404 B3 3.10E-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0404 K14486 - gmx:100789906 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0404 20 4112047 4116834 Ahy20g0404 20 4112047 4116834 ECH
Ahy20g0404 20 4112047 4116834 Ahy10g0223 10 1991108 1996507 hybridization