Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0395 ATGGCTTCTTCTAACAGACACTGGCCAAGCATGTTTAAGTCCAAGCCCACATGGCAGCATGATATCACTATCACCGCCACTTCTTCTTCTTCTTCTAGTACTAGTAGTAGTAGTAGAACCTCTCCTTACTCTTGCGACGACAGAAGCCCTGAGCCCAAGCCCAGGTGGAACCCAAAGCCCGAGCAGATTCGGATCCTGGAGTCCATATTCAACTCTGGGATGGTCAACCCTCCCAGGGATGAGATCAGGAAGATAAGGGCTCAGTTGCAAGAGTACGGTCAAGTTGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGCAAGTCTAGAACCAAACACAAGCTCCGCCACCTCCACACCAAGAATAACCCTCCTCCTCCACCTCCTCCGTCATCCACCTCATCCTCCTCCTCTGACAAGTCATCATCCCCACCCACTACTACTACTACTACTACTTCTGCTGCTACTACCAATACCTATTTCTATACCCACAATCACACCGCCACTATTCCACCACCACCACCGCCGCCGCACGTGGCCGCTGAGACTTTCATCTTCCCGCTGCAACATCATCAAGGTAACAGTACTACTACTACTATAACATCATCCCCGCAAGGCCTTTTCTTCTCTGAGCTCTCCAATGTGGTGCAAGCTCATCATCATCAGCCGTCTCCACCACCACCTCATCAGCTCATGATGCATAACGTCGTTGGTCCCTGCACTAGTCTCTTGCTTAGTGAGATCATGATGAATAATGCTTCAAAGAAAGATCATCATCAAGAACATGCCAGCAGCAATAAGTCCCTCAAATTAATGCACCATGGCGGCGGCCACCACCACACACCAAAGCTTAGTTTCTGCGTCACTCCACCTACTACTACAACCGCCACTCTCGTCCCTCCCACCACCACACCATCACTCCTCACTCAAGATGCAGTAGGCACTGGAGATGGAAGTGAGAAAATAACGGTGTTCATAAATGATGTGGCGTTTGAGGTGGCGGCGGGGCCATTCAATGTAAGGGAGGCATTTGGGGAGGATGCAGTCCTGATTCACGCCATCACTGGTCAACCTCTTCTCACTAACCAATGGGGTCTTACCCTCCACTCTCTCCACCATGGCGCTTCTTATTATCTGCTTCTACATACCCTCCCTCACGCACCTTATTAA 1170 0.5026 MASSNRHWPSMFKSKPTWQHDITITATSSSSSSTSSSSRTSPYSCDDRSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRTKHKLRHLHTKNNPPPPPPPSSTSSSSSDKSSSPPTTTTTTTSAATTNTYFYTHNHTATIPPPPPPPHVAAETFIFPLQHHQGNSTTTTITSSPQGLFFSELSNVVQAHHHQPSPPPPHQLMMHNVVGPCTSLLLSEIMMNNASKKDHHQEHASSNKSLKLMHHGGGHHHTPKLSFCVTPPTTTTATLVPPTTTPSLLTQDAVGTGDGSEKITVFINDVAFEVAAGPFNVREAFGEDAVLIHAITGQPLLTNQWGLTLHSLHHGASYYLLLHTLPHAPY* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0395 389 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 381 IPR044557 GO:0003700|GO:0050793
Ahy20g0395 389 MobiDBLite consensus disorder prediction 112 155 - -
Ahy20g0395 389 SUPERFAMILY Homeodomain-like 49 117 IPR009057 -
Ahy20g0395 389 MobiDBLite consensus disorder prediction 254 268 - -
Ahy20g0395 389 MobiDBLite consensus disorder prediction 19 45 - -
Ahy20g0395 389 MobiDBLite consensus disorder prediction 254 275 - -
Ahy20g0395 389 SMART HOX_1 51 118 IPR001356 GO:0003677
Ahy20g0395 389 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Ahy20g0395 389 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Ahy20g0395 389 MobiDBLite consensus disorder prediction 134 155 - -
Ahy20g0395 389 Gene3D - 24 113 - -
Ahy20g0395 389 MobiDBLite consensus disorder prediction 19 61 - -
Ahy20g0395 389 CDD homeodomain 52 114 IPR001356 GO:0003677
Ahy20g0395 389 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0395 Ahy-Chr20 4039416 4041188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0395 1 384 Wox Gene Family AT2G33880 43.765 1.70e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ahy20g0395 Homeodomain 2.10E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0395 - - aip:107619964 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0395 20 4039416 4041188 Ahy20g0395 20 4039416 4041188 ECH
Ahy20g0395 20 4039416 4041188 Ahy10g0210 10 1921315 1922989 hybridization