Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0393 ATGAATAAGATCGAAGAAGAAGGCATGGTTATAGCTTCCCAATCCCAAACAGAGTTACCTTTAAATGAGAATGACTCACAGGATATGGTTATATACCAAGTCCTGAACGAGGCTAGTAATAACCATCAGCAGCAGCAACATGAAGCGGCGTCGTTCATGATGATGAGTAGCGGACAGCAACGGCGTGGATTGGAAGCAAAGAAGAACATAGCGAAGAAGCACTACAGAGGGGTGAGGAGGCGGCCATGGGGGAAGTATGCAGCGGAGATAAGAGACTCGACGAGACAGGGAGCAAGGATATGGCTTGGGACGTTTCAAACAGCGGAAGAAGCTGCCATGGCTTATGATAGAGCTGCTTTCAAGATGAGAGGTTCCAAGGCTTTGTTGAACTTCCCTGCTGAGGTTGTTGCAGCTGCTTCTTCCACTGCTTCTACTTCCACTGCTTCAACTTCCATTCATACTTAG 465 0.4753 MNKIEEEGMVIASQSQTELPLNENDSQDMVIYQVLNEASNNHQQQQHEAASFMMMSSGQQRRGLEAKKNIAKKHYRGVRRRPWGKYAAEIRDSTRQGARIWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEVVAAASSTASTSTASTSIHT* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0393 154 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Ahy20g0393 154 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Ahy20g0393 154 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Ahy20g0393 154 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Ahy20g0393 154 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Ahy20g0393 154 PANTHER DNA-BINDING DOMAIN 10 145 IPR044808 GO:0003700|GO:0009873
Ahy20g0393 154 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Ahy20g0393 154 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Ahy20g0393 154 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Ahy20g0393 154 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 10 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0393 Ahy-Chr20 4016136 4017325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0393 13 135 AP2-EREBP Transcription Factor Family AT4G17500 47.917 2.85e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy20g0393 AP2 9.60E-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0393 K13433 - jre:109000931 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0393 20 4016136 4017325 Ahy20g0393 20 4016136 4017325 ECH
Ahy20g0393 20 4016136 4017325 Ahy10g0208 10 1898717 1899366 hybridization