Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0388 ATGCCTAAGGAAGCCTATAAATCAAAACATACAAAAGAAACTCCAACAAACTGTTTATGCAGCATGCATTGTTGCCCTTCAACTATTCTTCAATCACTTGCAATGACTTGGCTCTTCTTTTTTCTTGTTTTCATCATGAATGCAAACTCACATGAGGTCAAGAATGAAGGCAACAAAGTTATATCAGTTGGGGTGATTATGGATGCTAATTCTCGTGTGGGGAAAGAGCAGAGAGTAGCCATGGAAATTGCAGCACAAACTTACAATAACACTTCAAAGAACTACAAGTTGTCTCTCCATTTTCATAACTCTACCATGGACCCCATAAGTGACACCAATCTTGCGGAAGAAATGATAAGAATGCAGAAAGTGCAAGTGATTTTAGGCTTCCATAGATGGCCAGAAGCAGCTCTTATAGCTGAAATAGGATCGCGGTTTCAAGTTCCTATTATATCCTATGCAGAACCTTCCATTACTCCACCATTGATGTCAATCCGGTGGCCATTTTTGGTAAGAATGGCCAACAGTGGCAGAGCATATGTAAAATGCATTGTGGATATAGTCAAAGCTTATGGCTGGGAAAGAGTAATAGCCATCTATGAAGATGATGCCTATGGTGGAGAACAAGGGATGCTAGCCCTGCTATCTGAGGCCCTCCAAGATGCAAATTCAATGATTGAATACAATTTTATTCTTCCACCAATTTCTTCTTTGCATGATCCAAGAGGGCTAGTGCAAGACGAGCTACTTAAGTTAATGAATACTCAACAATCGCGAGTGTTTATCGTGCTGCAATCATCACTAGAAATGGTGATTCACTTGTTCAGAGAAGCTTCAAATATAGGACTTGTGGATAAAGAATCAGTTTGGATAATCCCAGAGAGCATAACCAATCTAATTGACTCCATCAACAAGTCTTCCATTTCATACATGGAAGGAGCTATAGGAATCAAGAACTACTACTCTGAAGAAAACAACAAGTACCAAGATTTTGAGGCTCAGTTTCAGAGAACTTTCTGGCCAAGAAGCCCCGAAGAAGATAACCGAAAGCCTGGATTTTTTGCTTTGCAAGCATATGATAGCATTAGCATTGTGTCTCAAGCACTGGACAGAATGAGCAATGGCAAAAGCAGCACAAATACCTTACTAAGAGAAATACAGTCAAGCAATTTTTCTGGTTTAAGTGGCCATATTGAATTTGAAGATGGAAAACTGCTGCAGAATCCTATCTTGAGGGTAGTGAATGTGGTTGGGAAGAGTTACAAAGAGTTGTGCTTTTGGACTCAGCAACATGGATTCTCCACAAGCTTCCATGCAACAAGACAAGATGGTGGTAATGGTAACCATGTTTCAGAATGCTTCAATGCTGTACTTTGGCCTGGGAATTTGCAAAGGACACCAAAGGGATGGAAAATGCCTACTAAACAAAAACCTATGCAAATCGCGGTCCCAGGCAGAACTACATTTTCCAGGTTTGTCAAGGTTGATTATGCCAAGAATCAAAACCTTGATAAATATGATGGATTCTGCATCAAGATTTTTGAGCAGGTGCACAAAATTTTGGGGTATGATCTACCCTATGAGTTCCATGCTATCAATTGCACCTATCCTGATTTGGTTCAATTAGTCTATAACAAGAGTTATGATGCTGTTGTTGGGGATATTACCATACTAGAGGAAAGATTGCCATATGTGGACTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGTTAGTTCCAGCAAAGTCTGACGAATCAGCATGGCTGTTCACCAAGCCATTTACCTGGCAACTTTGGACAGTTACAGGAGCCATCTTGATCTATACAATGTTAGTAGTTTGGCTACTTGAGAAAGAACCTAATCCAGAGTTTCATGGCAATTGGAAGAACCAGATCAGCACTGCTCTTTGGTTTACCATCTCCTCTTTGTTCTTTGCTCACAGGGAGAAAGTGTATAGAAAGTTAACTCGGGTGGTGATGGTATCATGGCTATTCCTAGTTCTGATTCTTAATTCAAGCTACACTGCAAGTCTTTCTTCAATGCTCACAGTGAAGCAGCTGCAGCCAAATGTCACAGACATTGAGTGGCTGAAGAAGAACAACATGAAGATTGGTTGTGATGGTGACTCATTTGTTAGAAACTACCTAGAGGATGTGGAGAAGTTCAAGCCAGAAAACATAATCAACATTATCAGTGAAGACAGATATATTGATGCATTTGCAAATGGTAGCATAGTAGCTGCATTTCTTGAATTACCCTATGAAAAAGTATTCATTAGTGAATATTGTGATGGATACACTGCCTCCACTCCCAGAACTAGATTTGGAGGATTAGGCTTTATGTTCCAGAAAGGCTCCCCGGTGACAAGAGATGTTTCCAGAGCTATATTACATCTCTCAGAAAATGGAGAGCTGAAGAAGTTGGAAGAGGAATGGTTGTTGAGTGCATCACAGAAATGCTCCAACATGACCTCCAATGGCACGGAAAGCTTGAGTCTAAGAAGCTTGTGGATTCTATTTGTCATCTCCGGTGCCACTTCCACTATTTGTATGCTACTATCAGCAATGCCATGGCAAAAGTTGTGTCTCCAAAGTCAAGAATTGGCACCAGAACATAATGGCACAACAAGTGATGAGAGTATTTGGAGAAGGGTGATTACACTTGCAATGCAGATTCATAACAAAAAGGTCAACAATTCAAGTGATCATTCTTCTTCTTTTGGAAGGGACAATCATTTGAGAGATAATGATAGCACTGAGCAACAACATCATCATCAACCTGTAAATGGAATCTTGATGCAACATTTTCCACCACCACCAGAAGAAGAAGCAAAAATTTCAGATCTTCCTCATCACTGA 2862 0.4025 MPKEAYKSKHTKETPTNCLCSMHCCPSTILQSLAMTWLFFFLVFIMNANSHEVKNEGNKVISVGVIMDANSRVGKEQRVAMEIAAQTYNNTSKNYKLSLHFHNSTMDPISDTNLAEEMIRMQKVQVILGFHRWPEAALIAEIGSRFQVPIISYAEPSITPPLMSIRWPFLVRMANSGRAYVKCIVDIVKAYGWERVIAIYEDDAYGGEQGMLALLSEALQDANSMIEYNFILPPISSLHDPRGLVQDELLKLMNTQQSRVFIVLQSSLEMVIHLFREASNIGLVDKESVWIIPESITNLIDSINKSSISYMEGAIGIKNYYSEENNKYQDFEAQFQRTFWPRSPEEDNRKPGFFALQAYDSISIVSQALDRMSNGKSSTNTLLREIQSSNFSGLSGHIEFEDGKLLQNPILRVVNVVGKSYKELCFWTQQHGFSTSFHATRQDGGNGNHVSECFNAVLWPGNLQRTPKGWKMPTKQKPMQIAVPGRTTFSRFVKVDYAKNQNLDKYDGFCIKIFEQVHKILGYDLPYEFHAINCTYPDLVQLVYNKSYDAVVGDITILEERLPYVDFTVPYAESGLSMLVPAKSDESAWLFTKPFTWQLWTVTGAILIYTMLVVWLLEKEPNPEFHGNWKNQISTALWFTISSLFFAHREKVYRKLTRVVMVSWLFLVLILNSSYTASLSSMLTVKQLQPNVTDIEWLKKNNMKIGCDGDSFVRNYLEDVEKFKPENIINIISEDRYIDAFANGSIVAAFLELPYEKVFISEYCDGYTASTPRTRFGGLGFMFQKGSPVTRDVSRAILHLSENGELKKLEEEWLLSASQKCSNMTSNGTESLSLRSLWILFVISGATSTICMLLSAMPWQKLCLQSQELAPEHNGTTSDESIWRRVITLAMQIHNKKVNNSSDHSSSFGRDNHLRDNDSTEQQHHHQPVNGILMQHFPPPPEEEAKISDLPHH* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0388 953 Gene3D - 742 822 - -
Ahy20g0388 953 SUPERFAMILY Periplasmic binding protein-like I 58 470 IPR028082 -
Ahy20g0388 953 Gene3D - 480 587 - -
Ahy20g0388 953 Pfam Ligand-gated ion channel 815 846 IPR001320 GO:0015276|GO:0016020
Ahy20g0388 953 Pfam Receptor family ligand binding region 79 416 IPR001828 -
Ahy20g0388 953 MobiDBLite consensus disorder prediction 898 953 - -
Ahy20g0388 953 Gene3D - 179 350 - -
Ahy20g0388 953 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 906 - -
Ahy20g0388 953 Gene3D - 56 178 - -
Ahy20g0388 953 CDD PBP1_GABAb_receptor_plant 62 437 IPR044440 -
Ahy20g0388 953 Gene3D - 362 479 - -
Ahy20g0388 953 SMART AABind_6 492 817 IPR001638 -
Ahy20g0388 953 PIRSF IGluLR_plant 29 937 IPR017103 -
Ahy20g0388 953 Pfam Bacterial extracellular solute-binding proteins, family 3 504 814 IPR001638 -
Ahy20g0388 953 Gene3D - 588 722 - -
Ahy20g0388 953 MobiDBLite consensus disorder prediction 908 923 - -
Ahy20g0388 953 CDD GluR_Plant 477 814 - -
Ahy20g0388 953 SMART GluR_14 480 816 IPR001320 GO:0015276|GO:0016020
Ahy20g0388 953 PANTHER GLUTAMATE RECEPTOR 3.4 41 906 - -
Ahy20g0388 953 SUPERFAMILY Periplasmic binding protein-like II 454 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0388 Ahy-Chr20 3972288 3976740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0388 36 854 Ion Channels AT2G29120 32.353 3.46e-143 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0388 - - gmx:100818619 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0388 20 3972288 3976740 Ahy20g0388 20 3972288 3976740 ECH
Ahy20g0388 20 3972288 3976740 Ahy10g0202 10 1872739 1874072 hybridization