Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0363 ATGCATACTCCTCCTCCTCCATCATCATCTTCTTCTTCTTCTAATTCTATTTGGGTATTGTCTAGCATAAAGCTTCAATTCTTTGCACGAATCAGAAGGTTCCTCCAATCAAAAGCGACACGAAAGCGCCGAAACCAACCAAGAAACAGAGCTGAGCAGAACAACAACGACAATAACAAGGTCGAAAAAGTTGTTGAAACGGTTCAAGTCATGGAGAAGCATGAGGAGGAGAAGGAAGAAGAGGAGGACTCTGCTATCATGTTGCAGAGGACAGTGAAGAAGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGGTGGCAGCCAAGGATATTGGAAATTTGGCAAAAGAAGATTTGAAGGTTAGAAAGTTGATAACAGAACTCGGTGTGGTGCCTGTGTTGGTCTCTATGGTGGCTTCCGACGTGGCCACCCGTCGCAGAGCGGCGTTGGTGGCGTTGATCCACCTTGCTGATGGAACTTACACGAACAAGGCTATGATAGTGGAGGCAGGAATATTATCCAAGCTGCCAAACACAGTTGACAATGTAGATGAATCAACAATCAATGAATTTTCTGAGTTGCTGTTATCGTTGTCTTCACTAGCAAACACCCAATTCCATTTTCCTTCATTGGACTTTCTACCATCACTAAGACACATTCTTGAGTCAAACTCATCAAGCTTAGACACAAAAACATCATGTTTGGGTGCCCTATACAACTTTTCAAGCGTGTTAGAGAACGCGGGAGCTTTGGTTTCATGTGGGATTGTTCCTATTTTATTAGAACTATCCTCAAGAAAAGAAACTTCAGAGAAAGCATTGGCAAGTCTAGGGAACTTGTTAGTGAGCATGATGGGGAAGAAAGCAATAGAGAATAGTTGTTTAGTGCCAAAGAACTTCATTGAGATCTTGTCATGGGAAGACAAACCGAAATGCCAAGAGTTATCGGTTTATATATTGATGATCCTAGCGCATCAAAGTTCAAGTCAAAGGGAGAAAATGGCACAGGCTGGCATTGTTCCTGTGCTTCTTGAAGTGGTTCTGTTGGGAAGCTCTTTGGCTCAGAAGAGAGCATTGAAGCTATTGCAATGGTTCAAGGATGAGAGGCAAACCAAGATGGGGCCACATTCGGGGCCACAAACACCGAGGTTTGCATCGATGGGGTCACCGGTGAATCAAAGAGAAGCAACGGAAGGGAAGAAGATGATGAAGAGTTTGGTTAAACAAAGCTTGCATAGGAACATGGAGATTATTACTCACAGGGCTAATGCTGCTGGAGACTCTTCTAGATTTAAGTCATTGGTTATTAGCACTAGTTCTAAGAGTTTGCCTTATTAA 1335 0.4322 MHTPPPPSSSSSSSNSIWVLSSIKLQFFARIRRFLQSKATRKRRNQPRNRAEQNNNDNNKVEKVVETVQVMEKHEEEKEEEEDSAIMLQRTVKKLHFGSWEEKEVAAKDIGNLAKEDLKVRKLITELGVVPVLVSMVASDVATRRRAALVALIHLADGTYTNKAMIVEAGILSKLPNTVDNVDESTINEFSELLLSLSSLANTQFHFPSLDFLPSLRHILESNSSSLDTKTSCLGALYNFSSVLENAGALVSCGIVPILLELSSRKETSEKALASLGNLLVSMMGKKAIENSCLVPKNFIEILSWEDKPKCQELSVYILMILAHQSSSQREKMAQAGIVPVLLEVVLLGSSLAQKRALKLLQWFKDERQTKMGPHSGPQTPRFASMGSPVNQREATEGKKMMKSLVKQSLHRNMEIITHRANAAGDSSRFKSLVISTSSKSLPY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0363 444 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 77 444 - -
Ahy20g0363 444 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 77 444 - -
Ahy20g0363 444 MobiDBLite consensus disorder prediction 38 60 - -
Ahy20g0363 444 Coils Coil 64 91 - -
Ahy20g0363 444 SMART arm_5 159 199 IPR000225 GO:0005515
Ahy20g0363 444 SMART arm_5 117 157 IPR000225 GO:0005515
Ahy20g0363 444 SMART arm_5 242 281 IPR000225 GO:0005515
Ahy20g0363 444 Gene3D - 51 379 IPR011989 -
Ahy20g0363 444 SUPERFAMILY ARM repeat 92 364 IPR016024 -
Ahy20g0363 444 MobiDBLite consensus disorder prediction 373 390 - -
Ahy20g0363 444 MobiDBLite consensus disorder prediction 370 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0363 Ahy-Chr20 3751069 3754696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0363 77 412 U-box Gene Family AT1G27910 26.437 4.45e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0363 - - adu:107468248 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0363 20 3751069 3754696 Ahy20g0363 20 3751069 3754696 ECH
Ahy20g0363 20 3751069 3754696 Ahy10g0174 10 1647137 1650950 hybridization