Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0339 ATGTCTAAAGAATATGCGGGTGAGATTATTATTGAAGAAGATGAGGAAACTTCTTCATTGGGATGTTGTTCCCAGAAATGCTCTTCATTTGATTTGAATGAAGAAGCAAGCAGTGAAGAAGAAGAAGAAGGAGGAGGTAAGAATAAGAAGGAGGAGGATGAGGCAGCATGTGAAGAGGAGATCAATGCGAACGGAAGATCAAACTCAAGAGAAGATGAAAGAAATAGTAACAACAAAAACAATGAGAGAAGAGGTGGAGTTAGGCAATATGTTAGATCCAAGATGCCAAGGCTTCGATGGACTCCTGAGCTTCATCTCTCTTTTGTTCATGCTGTTGAAAGACTTGGCGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGTTGATGAATGTGAGAGGGCTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGTAGCAAGAAACTTGACGAGACCGGCCAAGTATTAGGTCAAACATACAGATCGAGGCAATTGCATGAAGTAGTGGGACGTAGTAGAAATCATCATGAGTTACTCAATCCTCATCAGCATTTCAAGATGGGAAACGGTGGCATTATTCTTGCAACCAATTTCAACCATCATCATCATTTCCAAGGTTCTCTGATGCACCATCACCACCACCCCCACTTCTCCCTTTCATCACGTTCACATGCAATCGCCACCGATTCAGGGCAACATCAATTGTATTTGAATCATCAAGGATTGAGAGTAACAAGCAACGAAATTGTGTCCTCATCAAGTAATCATCAAGGAAGATCGAGTTCAAACCAAGTTCAAGTGATGGATACGTCTTGCAGAATTGCACCAATTAGACCAAGTCATTTCCTTGAAGAGAAGAAGTGGCCTCCCTTGGAAATTATGAACAATCATCATCAATGGAAGTTCAAGGGTCCTACTATTGGCAACATTCCTGAATCTGTTCAGCCAAGTATCAGAGAGTATTTATCAACCTCCAAGAATAATTTAAGGCTAGAATTTGATCCTCCATTTCGGATAAAGTTGAATGAAGTGAAGAGGGAGAAAAGGGAGGAAAGGTTGCCCGATTTGCAACTAGGTTTGAGTCATGGCGGAGATGGAAGTGATGATGATTGCAGAGAAACACAAGAGATCAGCACTAAGCTTTCACTTTCATAG 1164 0.4175 MSKEYAGEIIIEEDEETSSLGCCSQKCSSFDLNEEASSEEEEEGGGKNKKEEDEAACEEEINANGRSNSREDERNSNNKNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDETGQVLGQTYRSRQLHEVVGRSRNHHELLNPHQHFKMGNGGIILATNFNHHHHFQGSLMHHHHHPHFSLSSRSHAIATDSGQHQLYLNHQGLRVTSNEIVSSSSNHQGRSSSNQVQVMDTSCRIAPIRPSHFLEEKKWPPLEIMNNHHQWKFKGPTIGNIPESVQPSIREYLSTSKNNLRLEFDPPFRIKLNEVKREKREERLPDLQLGLSHGGDGSDDDCRETQEISTKLSLS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0339 387 MobiDBLite consensus disorder prediction 42 89 - -
Ahy20g0339 387 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 321 - -
Ahy20g0339 387 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 326 387 - -
Ahy20g0339 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 152 IPR017930 -
Ahy20g0339 387 MobiDBLite consensus disorder prediction 1 90 - -
Ahy20g0339 387 Gene3D - 95 152 - -
Ahy20g0339 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 321 IPR044848 GO:0003700
Ahy20g0339 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 326 387 IPR044848 GO:0003700
Ahy20g0339 387 SUPERFAMILY Homeodomain-like 94 150 IPR009057 -
Ahy20g0339 387 MobiDBLite consensus disorder prediction 354 387 - -
Ahy20g0339 387 Pfam Myb-like DNA-binding domain 98 148 IPR001005 -
Ahy20g0339 387 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 151 IPR006447 GO:0003677
Ahy20g0339 387 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0339 Ahy-Chr20 3546822 3552136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0339 87 157 G2-like Transcription Factor Family AT2G42660 77.465 1.06e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ahy20g0339 Myb_DNA-binding 2.70E-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0339 - - adu:107468251 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0339 20 3546822 3552136 Ahy20g0339 20 3546822 3552136 ECH
Ahy20g0339 20 3546822 3552136 Ahy10g0150 10 1473209 1478892 hybridization