Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0332 ATGAAGCCCTTCTTTTACAGATTCTTGATTCTCCTTGCTCTGTTTTCTCTCGTGGAATCTTCTTCATCATGCAGCAGCAACAACAACAACAGAGACCACGAGCTTGTCTTAAAAGCCTTCCAATATGTCTCTGGATTCAAACCTTCATGGTTCCAAACAACACGCCAACCTTCTTCTTCTTCTTCCAACTGTTCGGTACAAGAGTCATCTCCCATTATTAAGAACATAGAGCTTCCTTCAAGAAACTTAAGCGGCAATATCTCATGGAGCTACCTAAAGAACATGTCAAACCTGCAAGTTCTCGATCTCTCCGGAAATTCCCTGCAAGGCCAAGTATCAAACATGTTGTGGGCAACTCCAAACTTATTAGTAGTAAACCTCTCCAGAAACAGGTTCGGAGGAACCATTGCTTTCAACCAACTCACAACCGTTTCATCATCGCTTCAAGTTCTGAACCTCTCACACAACAGGCTCACCAATCAGGTTCACCTCTCTGGTTTCACAAACCTCAAAACCCTCGACCTTTCCCACAACCACCTTGGAACCTTACCTTCGGGCTTCCAGAACCTCAAAAAACTCCAACACCTCGATCTCTCTAACTGCAACATCGAAGGACCAGTGAAACAAGTCTCTTCCCTTCACTCACTCACCTACCTCGACCTCTCTAACAACACGTTGAATGGAACCTTCCCTTCAGATTTCCCTCCATTGAACACCATCAAGTTCCTCAACATCTCACACAACAACTTCATCAAATCCACAGAACTAAGCCCAAACAAGTACAAGAAGTTCGGCCAATCGGCGTTCATAAACGCCGGCGACAACTTCCACTTGAACTTCAACGCATCCAACCTCCATTCAAAGAAGCAACACCACCAACCACCAATGCAACCAACTAATAACAAACACCACAAGCACAAGTCAAAACACAAAACCGTTTTGCTTGTGGCGGCATCGTGTGCCTCAGGGGTAGTTTTGGTATTGTCGTTGAGCGCGTGCATGTTACGGTGTTACTGTAGGAAGAAGGAAGAGGCGAAGAGGAACAAGTGGGCCATATCGAAACCTGTGGCGTTGACGAGCATCAAGATGGAGAAATCAGGACCGTTCGCCTTCGAGACGGAGTCAGGAACGTCATGGGTGGCTGACCTGAAAGAACCGTCGTCGGCCGCCGTGGTGATGTTCGAGAAGCCGTTGATGAGTTTGACTTTCAAGGACTTGATGAGTGCCACGTCACACTTCGGGAAAGACTCACAACTTGCTGAGGGTAGATGTGGGCCCGTGTACCGAGCTGTTCTACCGGGAGATATCCACGTGGCAATCAAGGTTTTGGAAAACGCAAGAGACGTTGATCACGATGACGCTGTCAACATCTTCGTTGACCTCTCCAGGCTGAAGCACCCTAACCTCTTGCCCCTCTCCGGTTACTGCATCGCAGGGAAGGAGAAGCTGGTGTTGTATGAGTTCATGTCAAACGGGGATTTAGGTAGGTGGTTACACGAGCTACCAACGGGTGACACCAACGTGGAAGATTGGAGTGGTGACACGTGGGAGATTCAAAACGGTATCGCGTCACCTGAAAAGATGGCTTGGCCAACACGACACCGTATCGCCGTTGGTATGGCGCGTGGTCTCGCATTCCTCCACCACGCCGGATCCAGGCCCGTCGTTCACGGCCACCTGGTAACATCTAATATTTTACTCTCTGATGACTTCGAACCACGAATCGCTGATTTCGGGTTGAGGAAATTCGGGCAGGAGCAGAACGCGCCGAATTGCAGCACCGAGACTGACGTGTACTGCTTCGGTGTGGTGCTGATGGAGCTTCTGACGGGACGGCACGGCACGGCGGAGACAGTGGTTTCGGTGAGGAAGCTTGTTAGGGAGGGCCACGGTGTTCGCGCGTTGGATGAGAGGCTCGGATTCGGTGACTCAGAGGCTGAGATGGTGGAGAGCCTCCGAGTCGCGTACCTTTGCACCGCCGAGTCGCCGGCGAAGAGACCCACCATGCAGCAGGTCTTGGGTCTTCTCAAGGACATTCATCCGAGTGGCGGACTCGACTGA 2061 0.5041 MKPFFYRFLILLALFSLVESSSSCSSNNNNRDHELVLKAFQYVSGFKPSWFQTTRQPSSSSSNCSVQESSPIIKNIELPSRNLSGNISWSYLKNMSNLQVLDLSGNSLQGQVSNMLWATPNLLVVNLSRNRFGGTIAFNQLTTVSSSLQVLNLSHNRLTNQVHLSGFTNLKTLDLSHNHLGTLPSGFQNLKKLQHLDLSNCNIEGPVKQVSSLHSLTYLDLSNNTLNGTFPSDFPPLNTIKFLNISHNNFIKSTELSPNKYKKFGQSAFINAGDNFHLNFNASNLHSKKQHHQPPMQPTNNKHHKHKSKHKTVLLVAASCASGVVLVLSLSACMLRCYCRKKEEAKRNKWAISKPVALTSIKMEKSGPFAFETESGTSWVADLKEPSSAAVVMFEKPLMSLTFKDLMSATSHFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVNIFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGDTNVEDWSGDTWEIQNGIASPEKMAWPTRHRIAVGMARGLAFLHHAGSRPVVHGHLVTSNILLSDDFEPRIADFGLRKFGQEQNAPNCSTETDVYCFGVVLMELLTGRHGTAETVVSVRKLVREGHGVRALDERLGFGDSEAEMVESLRVAYLCTAESPAKRPTMQQVLGLLKDIHPSGGLD* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0332 686 PRINTS Leucine-rich repeat signature 170 183 - -
Ahy20g0332 686 PRINTS Leucine-rich repeat signature 213 226 - -
Ahy20g0332 686 SUPERFAMILY L domain-like 69 271 - -
Ahy20g0332 686 Gene3D Transferase(Phosphotransferase) domain 1 489 683 - -
Ahy20g0332 686 SMART LRR_typ_2 95 118 IPR003591 -
Ahy20g0332 686 SMART LRR_typ_2 167 189 IPR003591 -
Ahy20g0332 686 SMART LRR_typ_2 213 236 IPR003591 -
Ahy20g0332 686 PANTHER KINASE, PUTATIVE-RELATED 4 686 - -
Ahy20g0332 686 Gene3D Ribonuclease Inhibitor 146 287 IPR032675 -
Ahy20g0332 686 ProSiteProfiles Leucine-rich repeat profile. 169 191 IPR001611 GO:0005515
Ahy20g0332 686 Pfam Leucine rich repeat 147 203 IPR001611 GO:0005515
Ahy20g0332 686 Gene3D Ribonuclease Inhibitor 36 144 IPR032675 -
Ahy20g0332 686 Gene3D Phosphorylase Kinase; domain 1 373 488 - -
Ahy20g0332 686 ProSiteProfiles Leucine-rich repeat profile. 147 168 IPR001611 GO:0005515
Ahy20g0332 686 Pfam Leucine Rich Repeat 97 113 IPR001611 GO:0005515
Ahy20g0332 686 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 686 - -
Ahy20g0332 686 Pfam Protein tyrosine and serine/threonine kinase 416 585 IPR001245 GO:0004672|GO:0006468
Ahy20g0332 686 SUPERFAMILY Protein kinase-like (PK-like) 401 676 IPR011009 -
Ahy20g0332 686 ProSiteProfiles Protein kinase domain profile. 413 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0332 Ahy-Chr20 3471943 3474805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0332 72 679 Receptor kinase-like Gene Family AT5G07280 30.862 2.04e-70 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Ahy20g0332 PK_Tyr_Ser-Thr 5.10E-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0332 - - gmx:100778920 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0332 20 3471943 3474805 Ahy10g0144 10 1396375 1399526 hybridization
Ahy13g4561 13 145998269 146001203 Ahy20g0332 20 3471943 3474805 PCT
Ahy3g4311 3 143140856 143143642 Ahy20g0332 20 3471943 3474805 PCT
Ahy20g0332 20 3471943 3474805 Ahy13g4561 13 145998269 146001203 PCT
Ahy20g0332 20 3471943 3474805 Ahy3g4311 3 143140856 143143642 PCT