Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0327 ATGGAAGGTGTCAAGTTGGTTGCTTGGTTCTTCTCCTTGTTTATTTTGTGTTCGATGCCATTGGTTGTTGAGGGCACTGACAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTTGCTGCTTTGATGTCCATGAAGAATAAAATGAACGATGAATTGCACGTCTTGAATGGCTGGGATATTAATTCGGTTGACCCTTGCACTTGGAACATGGTTGGTTGCTCTGCCGAGGGTTATGTCATTTCCCTGGAAATGGCTAGTGCTGGTTTATCTGGAACTCTTTCGTCAGGAATTGGAAATTTGAGCCATCTCCGAACATTGTTACTGCAGAACAATCAGTTATCTGGTCCTATCCCGGCTGAAATAGGCAAGTTGTCAGAGCTTCAAACTCTAGACCTTTCCGGTAACCAGTTTGTTGGAGAAATTCCTAGTTCTTTGGGCTTATTGTCTCAACTAAGTTACTTGCGGCTCAGCAAAAATAATCTATCTGGACAGATCCCTCCACTTGTTGCTAACTTGACAGGCCTTTCATTCTTGGACTTGTCATTTAATAATCTCAGTGGTCCCACTCCAAAAATTTTGGCCAAAGGTTACAGTATTTCAGGAAATAACTTCCTTTGTACATCTCCTTCGGAACATTGTATGGACATTTCAAAACCACTAAATGGATCATCTCAGAAAGTCAAGAGTCATCACCAAAGGGTGATTTCTGTTGTTGTTGGCATCAGTTGCACATTTATAATTTCAGTGATGCTTGTGTGTTGGTTGCATTGGTACAGATCACGCATCCTCTATACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATTTGAAGAGGTTCACCTTCCGTGAACTACAAATTGCTACTGGAAATTTCAGTCAAAAGAACATCCTTGGACAAGGAGGCTTTGGCATTGTCTACAAAGGATGCCTTACAAACAAAATGCTGGTGGCAGTGAAGAGGCTGAAGGATCCCAATTACACCGGAGAAATGCAATTTCAAACTGAAGTTGAGATGATCGGCTTGGCTGTGCATCGTAACCTTTTGCGTCTCTATGGATTTTGTATGACTCCAGATGAAAGGTTACTTGTTTATCCCTACATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGACACATGCCGAGAAAAGCCATCTCTGGACTGGAACAGGCGAATGCGAGTTGCTGTTGGCGCTGCACGCGGGCTTCTGTATTTACACGAGCAGTGCAACCCTAAAATAATCCACAGAGATGTTAAGGCTGCAAACATTTTGCTAGACGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGCCTTGCTAAGCTGTTGGATCAAAGGGATTCGCATGTCACCACCGCCGTGCGCGGTACAGTAGGCCACATTGCCCCGGAGTATCTCTCCACTGGACAGTCTTCTGAGAAAACAGATGTTTTTGGATTTGGCATATTACTTCTGGAGCTCATAACAGGACAAAAGGCACTAGATGCTGGGAATGGTCAAGTACAAAAGGGAATGATTCTTGATTGGGTTAAGACATTATTTGAGGAGAAGCGGCTAGAAGTGTTAGTTGATAGGGATCTAAGGGGATGCTTTGATCCAGTTGAGCTAGAAATGGCAGTGGAGTTGTCTTTACAGTGCACTCAGTCACTTCCGAGTCTGCGGCCGAAGATGTCGGAAGTCTTGAAGATTCTAGAAGGCCTGGTTGGGCAGTCGGCGCAGCCGGAGGAGTCACAAGGAGGGTCTAACTTATATGAAGAAAGAGCATGCAGTTTCTCCCAAAACTATAGTGATGTTCATGAAGAACCTTCCTTTGTTATTGAAGCCATTGAGCTTTCTGGTCCTCGGTGA 1857 0.4416 MEGVKLVAWFFSLFILCSMPLVVEGTDSLLSPKGVNYEVAALMSMKNKMNDELHVLNGWDINSVDPCTWNMVGCSAEGYVISLEMASAGLSGTLSSGIGNLSHLRTLLLQNNQLSGPIPAEIGKLSELQTLDLSGNQFVGEIPSSLGLLSQLSYLRLSKNNLSGQIPPLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSPSEHCMDISKPLNGSSQKVKSHHQRVISVVVGISCTFIISVMLVCWLHWYRSRILYTSYVEQDCEFDIGHLKRFTFRELQIATGNFSQKNILGQGGFGIVYKGCLTNKMLVAVKRLKDPNYTGEMQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDTCREKPSLDWNRRMRVAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEVLVDRDLRGCFDPVELEMAVELSLQCTQSLPSLRPKMSEVLKILEGLVGQSAQPEESQGGSNLYEERACSFSQNYSDVHEEPSFVIEAIELSGPR* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0327 618 SMART serkin_6 295 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0327 618 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 618 - -
Ahy20g0327 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 618 - -
Ahy20g0327 618 Gene3D Transferase(Phosphotransferase) domain 1 371 578 - -
Ahy20g0327 618 SMART LRR_typ_2 101 124 IPR003591 -
Ahy20g0327 618 SMART LRR_typ_2 173 196 IPR003591 -
Ahy20g0327 618 SMART LRR_typ_2 125 149 IPR003591 -
Ahy20g0327 618 ProSiteProfiles Protein kinase domain profile. 295 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0327 618 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Ahy20g0327 618 Pfam Protein kinase domain 296 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0327 618 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Ahy20g0327 618 Gene3D Phosphorylase Kinase; domain 1 265 370 - -
Ahy20g0327 618 SUPERFAMILY L domain-like 37 209 - -
Ahy20g0327 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Ahy20g0327 618 Gene3D Ribonuclease Inhibitor 35 216 IPR032675 -
Ahy20g0327 618 SUPERFAMILY Protein kinase-like (PK-like) 279 573 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0327 Ahy-Chr20 3433917 3437994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0327 43 618 Receptor kinase-like Gene Family AT5G45780 73.150 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ahy20g0327 Pkinase 8.50E-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0327 - - gmx:100810610 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0327 20 3433917 3437994 Ahy20g0327 20 3433917 3437994 ECH
Ahy20g0327 20 3433917 3437994 Ahy10g0139 10 1365752 1369782 hybridization