Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0321 ATGGCCACTTCCGCCGCCGCCACAACTGCCGCAGCGCCACGCCAGCTGTCACAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCACCTCGGAACCAAAAATTGCGACTTCCAGATGGAACGCTACGTCTTCAAACGCCGTAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTTGCTATCGAGAACCCGCAGGACATCATTGTTCAGTCTGCTAGGCCATATGGTCAGAGAGCTGTCCTTAAGTTTGCACAATACACTGGTGCGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAAATGCAAACATCCTATAACGAGCCTCGTCTACTCATTCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAATATTCCAACCATTGCCTTCTGTGACACCGATTCTCCGATGCGCTATGTTGATGTTGGCATTCCTGCCAATAACAAGGGGAAGCACAGTATTGGTTGTCTGTTTTGGTTATTAGCAAGGATGGTTCTGCAGATGAGGGGTACTATTCGGCCGGGGCTTAAGTGGGACGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAATTACCAGCTGCCCCAGAATATGCCATTCAAGATTTTGGTGCTGCTGGCATTGCCGGCTTCCCCGCAGCTGATGGGGAATGGGGGGCTGTTACAGCTGAACAATCCTGGACTGAACCAGTTCCTCAGCAACCCATTGCAGCTGCTCCTGCTAACTGGGCCCCAGACGCCGCTGCAGGTGATTGGGAGCCAGTTCCAGCTCCACAGGCATCCGTTCCTGCACCTGGAGGTGTTGCTCCCACTGGCTGGGACTAG 927 0.5124 MATSAAATTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEELPAAPEYAIQDFGAAGIAGFPAADGEWGAVTAEQSWTEPVPQQPIAAAPANWAPDAAAGDWEPVPAPQASVPAPGGVAPTGWD* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0321 308 Hamap 40S ribosomal protein SA [rps-0]. 10 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Ahy20g0321 308 PANTHER 40S RIBOSOMAL PROTEIN SA 12 300 - -
Ahy20g0321 308 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 Gene3D - 22 227 - -
Ahy20g0321 308 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Ahy20g0321 308 TIGRFAM uS2_euk_arch: ribosomal protein uS2 19 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Ahy20g0321 308 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 MobiDBLite consensus disorder prediction 269 308 - -
Ahy20g0321 308 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy20g0321 308 PANTHER 40S RIBOSOMAL PROTEIN SA 12 300 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0321 Ahy-Chr20 3398478 3400889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0321 5 300 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.297 3.42e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0321 K02998 - gmx:100786575 455.677