Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0308 ATGAGGAATTGTGATGAATGGAAACCTTTTGTAGTAATGGTAGCAATTGATTTTTGTTTTGCAGCAGTGAATATTATTCTCAAGAAAGTTCTTGAAGAAGGAATGAACCATTTGGTTTTTATTACATACCGTTTATCAATTGCTACCATTCTCTTAGCTCCAATCGGATACTTTAGGGAAAGAAACAGTAGGCCAAGGCTCACATTTCGAGTTCTATGTTACATCTTCTTCAGTGCTATTGTGGGGGCATCAGTGACACAATATTTCTTCCTGCTGGGGATCCAATATACTTCTGCTACCTTTCCTTGTGCATTCATCAACATGGTGCCTGTGATCACGTTCATTATGGCATTACCATTCGGGTTAGAGAGTGTGAAGATCAAGTGCAAGAGTGGGAGAGCGAAGATTCTTGGGACATTGGTGTGCATAGGGGGTGCATTGTTGTTGACACTCTATAAAGGAAAGGCCTTGTTTAACTATTCTTCTGCAACTTCTATAGCAAAGACTGGAACAAGTAGTAGTAGTAGTAGTGGAAGATGGACTATTGGTGTTGTGGCTTTGATTCTTGGAACACTGTTTTGGTCATCTTGGTATATAGTACAATCAAGCATAAGCAAGAGGTTCCCATGTCAATACTCAAGTACAGCCATGATGACCTTCTTTGGAGCCATTCAAGCAGCTTTCATAAGCTTCTCCATTCAACACCATGATTTCTCCATTTGGGTTCTCAAGGGAAAGCTTCCAATAATTGCTGTTCTCTTCTCTGGGATGATTGGATCAGGATTGTGTTTTGTGGGGATGTCATGGTGTGTGAAGAAGAGGGGTCCAGTGTTCACTGCAGCATTCAGCCCTCTTGTTCAGATCATGGCTGCCATGATTGATATCCCTATCTTGCATGAGCAACTACATCTTGGAAGTGTCTTGGGATCGATGTTGGTGATGATGGGATTATACATTCTTCTGTGGGGTAAGAGCAAGGAGATTCAGAATTGTGTCATCAAGTTAGTCCAAGACTCTGAACAAAGTCAACAAACCAAGGAACAAGATCCGGAAATACAAGAAGCTACGGTTTCTTGTGATTACCAGTGTCACTAA 1095 0.4128 MRNCDEWKPFVVMVAIDFCFAAVNIILKKVLEEGMNHLVFITYRLSIATILLAPIGYFRERNSRPRLTFRVLCYIFFSAIVGASVTQYFFLLGIQYTSATFPCAFINMVPVITFIMALPFGLESVKIKCKSGRAKILGTLVCIGGALLLTLYKGKALFNYSSATSIAKTGTSSSSSSGRWTIGVVALILGTLFWSSWYIVQSSISKRFPCQYSSTAMMTFFGAIQAAFISFSIQHHDFSIWVLKGKLPIIAVLFSGMIGSGLCFVGMSWCVKKRGPVFTAAFSPLVQIMAAMIDIPILHEQLHLGSVLGSMLVMMGLYILLWGKSKEIQNCVIKLVQDSEQSQQTKEQDPEIQEATVSCDYQCH* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0308 364 Pfam EamA-like transporter family 12 150 IPR000620 GO:0016020|GO:0016021
Ahy20g0308 364 Pfam EamA-like transporter family 182 321 IPR000620 GO:0016020|GO:0016021
Ahy20g0308 364 PANTHER WAT1-RELATED PROTEIN 9 347 - -
Ahy20g0308 364 PANTHER WAT1-RELATED PROTEIN 9 347 IPR030184 GO:0016021|GO:0022857
Ahy20g0308 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 326 - -
Ahy20g0308 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0308 Ahy-Chr20 3207528 3211839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0308 6 329 Nodulin-like Gene Family AT1G11460 38.462 3.94e-85 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0308 - - gmx:100803670 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0308 20 3207528 3211839 Ahy10g0119 10 1231797 1235866 hybridization
Ahy13g4569 13 146057193 146059829 Ahy20g0308 20 3207528 3211839 PCT
Ahy3g4318 3 143212046 143214580 Ahy20g0308 20 3207528 3211839 PCT
Ahy20g0308 20 3207528 3211839 Ahy13g4569 13 146057193 146059829 PCT
Ahy20g0308 20 3207528 3211839 Ahy3g4318 3 143212046 143214580 PCT