Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0307 ATGGGAGCAGCAACAGCAGTGGAAAGAACTCGCAGCAGAAAGAAGGCATCATCGAGAGGACACCACAAATTTGTAGGTGTTCGTCAGAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGATTCGTTGCAGAAGGTTAGACTCTGGCTCGGAACCTTCGACACGGCTGAAGACGCCGCTAGAGCTTATGACACTGCTGCCAGAGCCTTAAGAGGTGTCAATGCAAGGACAAACTTTGACTTGCCTGCTGCAGAGTCTGGTGGCGCCGCTGCTTCGAAGCGCGGCGCCGGTTCCGGCTTCATTCCTGATTGCACTGAGCCTTTTTCATTTGAGGATTCCAGTGAGGCTGTGGCTGATGGAGATGGCCTTCTTGGTGCACTCAAGGCTAAACTTTTTGATGTAAAGGGCGGAGGAGGGAGGTTTCCTCCGCCGGTTGTTCAATCAAGCATGGTTTCAAGGTCAACTCAGAATCAGAATCAGAATCAGAATCAGAACTGTTCTGTGAAGAATAAAGAGTTGTTTTCTTCATCAGTAGTAATGCTCCCTAATAAGATGAATAATTATAATAATAATAATAATGCCAATTGCAGCAGCACTTGTAGTTTGCCATGTTTGATTAGTACTTCATCAAACACTTGTTCTAAGAGTGGGATCATGATCCCTGCTAATGCTAATCATGATGATCATGAAGGAACTTTTAATAGCTCTCATCATCATCATCAACAATTTTGTCAAACCCCATCACCTATGACAACATGGTCAAATAATGAAGTATCATATGATCAATTACCATGGACTCATCATCAAGAGAATGGTTTTCTTGCATCTTCAAGCACAGCTACTCTTACATGGCCTAATCATCTCTCAGGGGTAAATGAGTCAAATACTGTAGATAATATGGGATATAATACAGATTATCATAATCCTGGAACATCAAATAGCAGCAGGAATAACAGTAGTATGCAATTTCCTCTGATTGGTGGAGTAAGCAATGAAGGATTTTGGACAATGGAGCAGCAACAATTTCTGCAATGTGAAGGCTCCAATTGGTTTTCTTCTAATGGATATTGGGATCCTCTTCTCTTTGTGCCCTCTGATCTATAG 1104 0.4303 MGAATAVERTRSRKKASSRGHHKFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGVNARTNFDLPAAESGGAAASKRGAGSGFIPDCTEPFSFEDSSEAVADGDGLLGALKAKLFDVKGGGGRFPPPVVQSSMVSRSTQNQNQNQNQNCSVKNKELFSSSVVMLPNKMNNYNNNNNANCSSTCSLPCLISTSSNTCSKSGIMIPANANHDDHEGTFNSSHHHHQQFCQTPSPMTTWSNNEVSYDQLPWTHHQENGFLASSSTATLTWPNHLSGVNESNTVDNMGYNTDYHNPGTSNSSRNNSSMQFPLIGGVSNEGFWTMEQQQFLQCEGSNWFSSNGYWDPLLFVPSDL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0307 367 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Ahy20g0307 367 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Ahy20g0307 367 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Ahy20g0307 367 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Ahy20g0307 367 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Ahy20g0307 367 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Ahy20g0307 367 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 363 - -
Ahy20g0307 367 MobiDBLite consensus disorder prediction 1 23 - -
Ahy20g0307 367 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Ahy20g0307 367 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Ahy20g0307 367 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0307 Ahy-Chr20 3203078 3204377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0307 11 79 AP2-EREBP Transcription Factor Family AT5G19790 68.571 1.81e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g0307 AP2 6.60E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0307 - - gmx:102661478 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0307 20 3203078 3204377 Ahy10g0118 10 1227333 1228477 hybridization