Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0300 ATGTCAAATTATCCATATCCCTGTAGTAGTTGCAAACAGCATGACTTTGAGTGTACTATCTGCACAAAACTCGCATCTCTGTATCTAATTAGAAACCACCAGAATCTTTTAGTTTCAATTAGCATGGTGGAAGGATATCTTGTTCCAAATATGATTAGCAATTCCAATTCATTAATGTTGATGATGGTATTAATACTGGTTGGCACGGTGCCGGGGATATGCCACGGTGAAGATGGGTGTGGAGGACACAGGTGCGGATGCCATGGCCCTCCAATTCGATTCCCATTCCGTCTTAAAGACAAGGAGCCCCCTCACTGTGGTTACCCTGCCTTTGATCTCACTTGTTCTGATTCTCATGATACCTTCATTGAGTTCTCTGCTTCTCCTGTCCCACTTAAACTCCTTGTCACTGATATCCAATATGAATATAACTCTTTCCAAGTCTCTGACACGCAAAATTGCCTTCCCGCCCACTTGCTCAAACTCATAAAAAATTCTTCCTCAATTTCTCCTTTCCAGTTCAGTCGGGATCAAACTCTGAACGATATATCTTTCTTCAATTGTTCACCTGATCCGCAATATCAACTCTCCTGCCCCATTTACGTTGCTGACAGCTACGATTTACTCCTCAGTTCCAATCTCGTATCTTGCACCAAGATTTTTGACATTTCTTCAACCTTCTATGACCCACAATTAGTAGTTTGGTACAATACTTTGGATTTGTTGTGGTCGAAACCTAATTGTAGCATGTGTGAAACACAAGGCAAGAGATGTAAACTGAAGAACAATGGCACTCAAGGTGAAGTTGAGTGCTTCGGCCACCATCATAATAACTTGCTCTTCGGTTCTACAGGTGTTGTGGCAGGTTTAATTCTGCTGGCAGCAGTGGCTATTGCAGTGTTTAAGATCTATCAACATTTTAGAATGAAAGGAGAAGATCGAGCAAGAATTGACAAGTTCTTGGAAGATTACAGGGCACTCAAGCCTACCAGATTCTCTTATTCTGATATAAAGAGGATCACAAATGGTTTCAAGGACAAGCTGGGTGAAGGAGGTCATGGAGCAGTCTTCAAGGGCATGCTCTCCTCGGAAATTGGCGTAGCTGTGAAGATACTCAACAGCAACACAGAGGGTGAAGGGAAAGATTTCACCAACGAGGTGGGAACCATGGGCAAAATTCACCATGTCAATGTGGTTCGCTTACTTGGCTTTTGTGCGCAAGGATTTCATTGTGCTCTAGTTTATGATTTCTTTCCAAAAGGTTCATTGCAAAACTTCATATCCACGCCAGATAACAAGGACGTCTTCCTTGGATGGGAGAAGCTTCACCAAATTGCCCTTGGTGTTGCTAGAGGCATTGAGTATCTTCACCATGGTTGTGAGCAACAGATCCTTCATTTTGACATCAATCCCCACAATATCTTACTAGATGACAACTTCACTCCCAAGATTACTGATTTTGGGCTTGCCAAGTTGTGTTCCAAAGATCAGAGCAAAGTTTCAATGACAGCAGCCAAGGGAACCATGGGCTACATTGCGCCTGAAATTGTCTCAAGAAACTTTGGAAATGTGTCTTACAAAGCAGACATTTATAGCTATGGGATATTGTTGCTTGAAATGGTAGGAGGAAGGAAAAACATAGAGATGGAAGTTGAGGGGTCTTTAAGGATTTTATACCCCGAATGGGTGCACAATTTGCTTGATGGGGGAGATTTTCAAGTACACATTGAAGATGAGAAAGACAATAAACTTGCAAAGAAAATTGCAATTGTTGGACTACAATGCATTCAGTGGCAGCCATCAGATCGTCCTTCCATCAAAACTGTCATAAGTATGTTAGAAGGAGATGCAGACAAATTAAGTGTACCTCGTAATCTTTTCGACTTAACAAACTCTATTAGCAGAGGACGACGAATAACCCACCAGACAAGGCCTTTAAATTTAGAGTTGGAGAGGATTGAAGAATTAGATCATTGTCAAACAAGTCCTTTCTAA 1995 0.4165 MSNYPYPCSSCKQHDFECTICTKLASLYLIRNHQNLLVSISMVEGYLVPNMISNSNSLMLMMVLILVGTVPGICHGEDGCGGHRCGCHGPPIRFPFRLKDKEPPHCGYPAFDLTCSDSHDTFIEFSASPVPLKLLVTDIQYEYNSFQVSDTQNCLPAHLLKLIKNSSSISPFQFSRDQTLNDISFFNCSPDPQYQLSCPIYVADSYDLLLSSNLVSCTKIFDISSTFYDPQLVVWYNTLDLLWSKPNCSMCETQGKRCKLKNNGTQGEVECFGHHHNNLLFGSTGVVAGLILLAAVAIAVFKIYQHFRMKGEDRARIDKFLEDYRALKPTRFSYSDIKRITNGFKDKLGEGGHGAVFKGMLSSEIGVAVKILNSNTEGEGKDFTNEVGTMGKIHHVNVVRLLGFCAQGFHCALVYDFFPKGSLQNFISTPDNKDVFLGWEKLHQIALGVARGIEYLHHGCEQQILHFDINPHNILLDDNFTPKITDFGLAKLCSKDQSKVSMTAAKGTMGYIAPEIVSRNFGNVSYKADIYSYGILLLEMVGGRKNIEMEVEGSLRILYPEWVHNLLDGGDFQVHIEDEKDNKLAKKIAIVGLQCIQWQPSDRPSIKTVISMLEGDADKLSVPRNLFDLTNSISRGRRITHQTRPLNLELERIEELDHCQTSPF* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0300 664 ProSiteProfiles Protein kinase domain profile. 342 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0300 664 SUPERFAMILY Protein kinase-like (PK-like) 324 614 IPR011009 -
Ahy20g0300 664 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Ahy20g0300 664 Gene3D Phosphorylase Kinase; domain 1 318 417 - -
Ahy20g0300 664 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Ahy20g0300 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 69 650 IPR045874 GO:0004672
Ahy20g0300 664 Pfam Protein kinase domain 345 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0300 664 Pfam Wall-associated receptor kinase galacturonan-binding 84 150 IPR025287 GO:0030247
Ahy20g0300 664 PANTHER RECEPTOR-LIKE KINASE 69 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0300 Ahy-Chr20 3168251 3170598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0300 55 623 Receptor kinase-like Gene Family AT5G38260 35.714 8.14e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ahy20g0300 Pkinase 1.00E-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0300 - - aip:107619931 1325.84