Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0295 ATGACTAGGGCTGTCCGCAATAGGGTACTCAAGGATGCGAATGGTGATGTCAGTGATCATCTACGCAATCACATACATTTAACAAATTGCATTCACTTGAAGAACCACATGCACAAGAACAGCCCTATCCTGGCTGATAGGTCCCTCATGAGGGACCTTGTTGTGCTTCAGAGGTCACGTTCACTCAGGGACCCTTCGGCCAGCCCTCAATCATGGAACTCACCTTCTGTGGTTGATATGCTTTTCAAAAAGGTTGAAAATGATGTCATGCTCCATGGAGGAAGAAGGTCTGTGGGCGGGGAGCGCAGGAAGGAAGGGAGGAGGTTGTCCGGAACCTCGCCACCCTTGGTGAGCATAGGTACATCAAGAGTTGCTCCAGGTGATGCTAGTAGAGGCAATGATGGGGTGCCAGCAACTAGTGAGCGTAGTAGCAAGAGTGGAATTGGGGATGGGAAGAGAGTTGGGAGAGAAGAATCTGGTAGAAAGAGTGATAGGCCTGATTATGTGGATGTTAGTCAAGAACAGCATCTAAGTCAAGCTGCCAAAACTTTGTCTGAAGATGTTGCTTCAAGGCACTCTGAATCTAAAGGGAGAAAGAAACATAAAGGGAAAAATGTTCGAGATGTTCAAGTTAAGACCCTTTCTGAACAGCTTAATGATATTCCGTTGGATAGTGATGATTTAGCATCATCAAACATCCATTTTCGTGGAAGGTTTCCTAGACAAGAGAAAATCATTGAGGAGGCAGAAGCCAGTGTGCGTGGTCATGGAAGTCGGGTAAAGAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGGGTGGCTACAGCATCAAGAGATACTGGTGCTGAGAATGAATTGTCTGTGGCCTCCAACTCATTAGCTCATGGTTCAGCCCACCAGAGATATCACTCAGAGGAGGCTGATGAGTTCCTAGATGGAAATGTTACCAGGGCTCCAAAAAATGGTTGTGGTATTCCATGGAATTGGTCCAGGATTCATCATAGAGGTAAAACATTCCTTGACATGGCAGGGAGAAGTTTTACTTGTGGTTTATCTGACTCAAGGTTAAGGAAAGGGTTAAATGGCAATGGAAGAAATATTTCTGAAATGCCTGTGGCATCTGAGCACTCAGGATCATCTACTAAATCTGATGCAGAGGCAATGCCTTTATTACTTGATGCATCTGGGAGCACTGAAAATGCTTGTTGGTCCCATGACTATTCCGGGGAACTTGGTCTTTTTGGTGATAACTTGTTCAACCGTGATATTGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGACCAACATAAGTTGAGAGGGAGTCGTCATGGTAGACATCAAAGCTTAACACAAAAGTATATGCCGCGAACCTTCAGAGATATGGTTGGACAGAGTTTAGTGTCACAAGCTCTTTCGAATGCTGTAATGAGGAGAAAAGTTGGATTGTTGTATGTGTTTTATGGTCCCCATGGCACCGGAAAAACTTCCTGTGCCCGCATATTTGCCAGAGCATTGAATTGTAACTCTTCGGAACACCCGAAACCTTGTGGCTTTTGCAATTATTGCATGGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGCCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTTCTTGACCATATGATTGTATCCCAGCTCCCATCACAGTACAGAGTGTTCATTTTTGATGACTGTGATACTTTATCAGTGGATTGTTGGAATGCCATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCCTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTTCCAAAGCTGAAGGATGGAGATATTATATATACATTGCAGTTGATTGCAACCAAGGAAGGTCTAGATATTGATAAGGATGCCTTGAAACTCATCGCATCAAGATCTGATGGATCGTTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAGGAACTGGTAGGGCTTATCTCTGATGAGAAATTGATTGATCTACTTGATTTGGCATTATCTGCTGACACAGTCAATACTGTGAAGAATTTGAGGGTGATCATGGAAACTGGTGTTGAGCCATTAGCTTTAATGTCACAGCTCGCCACAGTAATAACTGATATACTTGCTGGGACATATGACTTCACAAAAGAAAGGCGAAGAAGAAAGTTCTTCCGGAGACAGCCGTTGTCTAAAGAAGACATGGAAAAGCTTCGCCAAGCACTAAAAACATTATCTGAGGCTGAAAAGCAGTTGAGGATGTCCAATGATAAGCTTACGTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAACAATATGTGATGCCTACTTCATCTGATAATAGCTTCAACCATAGTCCCCTAGATCTAAACAATTCTGGTGTGAGAGAAGCAACCAGAATAAATGGAAACCCTGTTGAAATTTCCAGCAAAGCAAGGCAATTATCAGTAGATTCTAGATTAGAAAACTTCCATGCGGGACACTCAGCTAATGGTATGACAAAGGATCCTAGTACAGAGAAAAGAAGACTCAGTGTGTCTGCTTCTGCCACTCAACAAACTTATTCCCATATGGCCAACAAGAGTAGAATGAATGAAAGGCAGATATTGAGTAAAAACCATAAAGGTATTGAAGAGATGTGGTTAGAGGTTCTTGAGAGGATTCAAGTTACTGGACTGAGAGAATTTTTGTATAAAGAAGGCAAGCTGATCTCTGTCAGTTTTGGAGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAAATGACCAAATCCACGGCTGAGAAGTTCACAGGTCACATTTTACAAGCATTTGAATCTGTCCTTGGAACATCTGTAACGATAGAAATTAGATGCGAGTCAACTAGAGATGCAGGCTCAGCTGTTCAACTTCCTCTTACATTGCCTGCTACTGATGATAGTTCGTCACAAATTAGAGAATTAAGTGGTGTCAGTGTCGCTCGAGCTCATCCAAGGGGTGAAATCATAGAAGAAGCAGCTTCTCCAGCAGAGCACAAGAATGATGCACAGCAAGTTGATGCTCATGCAACATCTTACAGAAGTGTAGAAGGTTCAAGTATAGGGCAAGCATCAGCTTCCCAAAGAAATCCAATAGCGGAAAGCCAGCGAAGTGGGTGGTCGAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACTAGAGAATCTGAAACTGGAACCAAGATCAAGGAGCTTACTTTGCTGGAAAGCATCAAGAGCAACCCGTCAGAAGCTGTCCCGCTTGAAAATTCGAACCCGAAAACCAAGAGCATTGCTGAAGTTAGTCTCATGTGGGAGATGTCTCTCTTCAAAATCTCCAAGATAG 3432 0.4312 MTRAVRNRVLKDANGDVSDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPQSWNSPSVVDMLFKKVENDVMLHGGRRSVGGERRKEGRRLSGTSPPLVSIGTSRVAPGDASRGNDGVPATSERSSKSGIGDGKRVGREESGRKSDRPDYVDVSQEQHLSQAAKTLSEDVASRHSESKGRKKHKGKNVRDVQVKTLSEQLNDIPLDSDDLASSNIHFRGRFPRQEKIIEEAEASVRGHGSRVKRRKFRSARRARVATASRDTGAENELSVASNSLAHGSAHQRYHSEEADEFLDGNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFTCGLSDSRLRKGLNGNGRNISEMPVASEHSGSSTKSDAEAMPLLLDASGSTENACWSHDYSGELGLFGDNLFNRDIDSDLASEARSGDQHKLRGSRHGRHQSLTQKYMPRTFRDMVGQSLVSQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCMAHDMGKSRNIREVGPVSNFDFESIMDLLDHMIVSQLPSQYRVFIFDDCDTLSVDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDGDIIYTLQLIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLIDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVMPTSSDNSFNHSPLDLNNSGVREATRINGNPVEISSKARQLSVDSRLENFHAGHSANGMTKDPSTEKRRLSVSASATQQTYSHMANKSRMNERQILSKNHKGIEEMWLEVLERIQVTGLREFLYKEGKLISVSFGAAPTVQLMFSSQMTKSTAEKFTGHILQAFESVLGTSVTIEIRCESTRDAGSAVQLPLTLPATDDSSSQIRELSGVSVARAHPRGEIIEEAASPAEHKNDAQQVDAHATSYRSVEGSSIGQASASQRNPIAESQRSGWSKRKAVSIAEKLELENLKLEPRSRSLLCWKASRATRQKLSRLKIRTRKPRALLKLVSCGRCLSSKSPR* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0295 1143 Pfam DNA polymerase III, delta subunit 465 622 - -
Ahy20g0295 1143 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 1029 1110 - -
Ahy20g0295 1143 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 189 993 - -
Ahy20g0295 1143 MobiDBLite consensus disorder prediction 1041 1074 - -
Ahy20g0295 1143 CDD HLD_clamp_pol_III_gamma_tau 622 685 IPR045085 -
Ahy20g0295 1143 MobiDBLite consensus disorder prediction 367 382 - -
Ahy20g0295 1143 MobiDBLite consensus disorder prediction 146 171 - -
Ahy20g0295 1143 Gene3D - 440 619 IPR027417 -
Ahy20g0295 1143 ProSiteProfiles IQ motif profile. 242 271 IPR000048 GO:0005515
Ahy20g0295 1143 MobiDBLite consensus disorder prediction 172 186 - -
Ahy20g0295 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 669 IPR027417 -
Ahy20g0295 1143 MobiDBLite consensus disorder prediction 362 382 - -
Ahy20g0295 1143 MobiDBLite consensus disorder prediction 1028 1074 - -
Ahy20g0295 1143 MobiDBLite consensus disorder prediction 92 109 - -
Ahy20g0295 1143 CDD AAA 463 622 - -
Ahy20g0295 1143 SMART AAA_5 481 622 IPR003593 -
Ahy20g0295 1143 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 448 796 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Ahy20g0295 1143 Coils Coil 758 785 - -
Ahy20g0295 1143 PANTHER PROTEIN STICHEL-LIKE 3 1029 1110 - -
Ahy20g0295 1143 SUPERFAMILY post-AAA+ oligomerization domain-like 693 796 IPR008921 GO:0003677|GO:0006260
Ahy20g0295 1143 MobiDBLite consensus disorder prediction 92 208 - -
Ahy20g0295 1143 Pfam DNA polymerase III subunits gamma and tau domain III 678 797 IPR022754 GO:0003887
Ahy20g0295 1143 PANTHER PROTEIN STICHEL-LIKE 3 189 993 - -
Ahy20g0295 1143 Gene3D - 625 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0295 Ahy-Chr20 3065575 3071619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0295 448 746 Core DNA Replication Machinery Family AT1G21690 23.333 3.21e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0295 - - gmx:100809005 1824.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0295 20 3065575 3071619 Ahy20g0295 20 3065575 3071619 ECH
Ahy20g0295 20 3065575 3071619 Ahy10g0104 10 1064075 1070114 hybridization