LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy20g0289	ATGGATGAAGTTCAGGGAAGTTCAAGTTCCTTACCTCCATTTCTCACAAAGACATATGAGATGGTGGATGATCCTTCCACCAATTCCATTGTTTCATGGAGTGACAGCAGCAGGAGTTTTGTTGTTTGGAATCCACCAGAGTTTGCAAGGGTCTTGTTACCAAAATTCTTTAAGCACAATAACTTCTCAAGCTTTATCAGACAGCTCAACACTTATGGCTTTAAGAAGATTGACCCTGAACAATGGGAATTTTCCAATGATGATTTTGTAAGAGGTCAACCAAATCTTATGAAGAATATTCATAGGCGCAAACCGGTTCATAGCCATTCTTTGCAGACTCTACATGGACAAGTGGCTATTCCGCTAACCGAGTCAGAACGGAAGAGTCTGAAAGATGACATTGAAAAGCTTAAGCATGATAAACAAGAACAGATTCTGGAGTTACAGAGACAAGAACAAGAGTGGGAAATTTTCAAGTTAAAAATAGATTGCACAAAGGAGCGTTTGGAAACAATGGAAAAGAGGCAACAGAATATGATTTCTTCTATTTCTCAAGTGCTGCATAAACCTGGGGCTGCATTAAATCTGTTGACACTGACAGAAAACATGGAAAGAAAACGAAGGTTGCCAAAAGGCAGCAGTCACTTTACTGATGAAGCTAGCATTGAAGATCCTATGGAAATATCCCAAGTGTTACCTAGTGAAAATGCAGAGAGTAGTGGCTTCGTCACATCATGCATAGAACGAATGAATCAGCTCGAGTCAACCCTGGTATTTTGGGAATATATTGCACAAGATGTGAATGAAACCATTGTTCAAAGTCATTCAAACTTGGATGTTGATGAATCCACAAGTTGTCCAGATAGTCCAGCGGTATCTAGTGTGCAACTCGATGATGAAGTTCAGCCTAAGTCATCCGGGATAGACATGAATTCTGAGCCAGCTTTACCTTCTGATACTGTTGCATTGAAGGAACAACCTGTTGGAACTACCCCTGCAGCTACTGGTGTTAACGACAAATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCAACAGAACTGCAAGAGGCACAATCAGAAAGAATGGATTTGGACAACAAAAAGAATGAAGGAAAGCCTAGTGCACATGGCAAATTTTGGTGGAACATGAGGAATGTAAATAATCTTCCAGAACAGATGGGTCATTCTTAG	1194	0.4037	MDEVQGSSSSLPPFLTKTYEMVDDPSTNSIVSWSDSSRSFVVWNPPEFARVLLPKFFKHNNFSSFIRQLNTYGFKKIDPEQWEFSNDDFVRGQPNLMKNIHRRKPVHSHSLQTLHGQVAIPLTESERKSLKDDIEKLKHDKQEQILELQRQEQEWEIFKLKIDCTKERLETMEKRQQNMISSISQVLHKPGAALNLLTLTENMERKRRLPKGSSHFTDEASIEDPMEISQVLPSENAESSGFVTSCIERMNQLESTLVFWEYIAQDVNETIVQSHSNLDVDESTSCPDSPAVSSVQLDDEVQPKSSGIDMNSEPALPSDTVALKEQPVGTTPAATGVNDKFWEQFLTENPGSTELQEAQSERMDLDNKKNEGKPSAHGKFWWNMRNVNNLPEQMGHS*	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy20g0289	397	Coils	Coil	120	154	-	-
	Ahy20g0289	397	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-4C	1	384	-	-
	Ahy20g0289	397	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy20g0289	397	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy20g0289	397	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	384	IPR027725	-
	Ahy20g0289	397	MobiDBLite	consensus disorder prediction	279	313	-	-
	Ahy20g0289	397	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy20g0289	397	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy20g0289	397	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy20g0289	397	MobiDBLite	consensus disorder prediction	347	380	-	-
	Ahy20g0289	397	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy20g0289	397	MobiDBLite	consensus disorder prediction	359	375	-	-
	Ahy20g0289	397	SUPERFAMILY	"Winged helix" DNA-binding domain	9	103	IPR036390	-
	Ahy20g0289	397	Gene3D	-	6	104	IPR036388	-
	Ahy20g0289	397	MobiDBLite	consensus disorder prediction	279	314	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy20g0289	Ahy-Chr20	3018785	3020863	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy20g0289	7	396	HSF	AT4G18880	53.250	5.49e-120	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Ahy20g0289		HSF_DNA-bind	2.40E-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy20g0289	K09419		-	gmx:100798004	549.666

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g0289	20	3018785	3020863	Ahy20g0289	20	3018785	3020863	ECH
	Ahy20g0289	20	3018785	3020863	Ahy10g0099	10	1025537	1027611	hybridization
	Ahy13g4591	13	146252733	146255115	Ahy20g0289	20	3018785	3020863	PCT
	Ahy3g4338	3	143374611	143376964	Ahy20g0289	20	3018785	3020863	PCT
	Ahy20g0289	20	3018785	3020863	Ahy13g4591	13	146252733	146255115	PCT
	Ahy20g0289	20	3018785	3020863	Ahy3g4338	3	143374611	143376964	PCT