Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0283 ATGTCAGATAATAATAATAATAATAATAATAATAACAGAGATGTTGTAATGAGTGTTACCAATGATGAAGATGAGTCAGACACCAAGGTCACTGTGCCTCTTCTGCAAAAGATGGTAGCAGAGGTAGTGGGAACGTTCTTCTTGATATTTGCAGGGTGTGGTTCATTGGTTGTGAACCTCAACAACGACAAGGTGGTGACACTTGCAGGAATCGCAACAGTTTGGGGGTTGCTTGTGATGGTGTTAATATACTCTCTTGGACACATATCTGGTGCTCATTTCAACCCTGCAGTTACCATTGCTCTTGCTTCCATAAACAGGTTCCCTTGGAACCAGGTTCCTGCTTATATCTTCTCTCAAGTTCTTGGATCCACACTTGCAAGTGGTGCTCTCAGACTCTTATTTACGGGCAAGGATAACCAGTTTCCCGGAACCGTTCCATCTGTGACTCACGTTCAAGCTCTCGTTATTGAATTCATAATCACTTTCTTTCTCATGTTCGTCATTTCTGGGGTGGCCACTGATAACCGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACTATTCTACTAAATGTGCTCGTTGCAGGGCCATTAACGGGAGCATCAATGAACCCTGCAAGATCATTGGGACCAGCTATTGTGCACAGTGAATACAGAGGAATATGGGTGTATTTGGTGTCACCCATTGTTGGAGCTGTGGCTGGTGCATGGACCTACAATTTCGTTAGGTACACAAAGAAGCCGGTTCGTGAGATCACCAAGAGTGCCTCTTTCTTCAAGGGGAGTAACTAG 801 0.4432 MSDNNNNNNNNNRDVVMSVTNDEDESDTKVTVPLLQKMVAEVVGTFFLIFAGCGSLVVNLNNDKVVTLAGIATVWGLLVMVLIYSLGHISGAHFNPAVTIALASINRFPWNQVPAYIFSQVLGSTLASGALRLLFTGKDNQFPGTVPSVTHVQALVIEFIITFFLMFVISGVATDNRAIGELAGLAVGSTILLNVLVAGPLTGASMNPARSLGPAIVHSEYRGIWVYLVSPIVGAVAGAWTYNFVRYTKKPVREITKSASFFKGSN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0283 266 CDD MIP 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy20g0283 266 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 7 264 - -
Ahy20g0283 266 SUPERFAMILY Aquaporin-like 32 256 IPR023271 -
Ahy20g0283 266 TIGRFAM MIP: MIP family channel proteins 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy20g0283 266 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy20g0283 266 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy20g0283 266 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy20g0283 266 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy20g0283 266 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy20g0283 266 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy20g0283 266 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Ahy20g0283 266 Gene3D Glycerol uptake facilitator protein. 1 258 IPR023271 -
Ahy20g0283 266 PANTHER AQUAPORIN NIP2-1 7 264 IPR034294 -
Ahy20g0283 266 Pfam Major intrinsic protein 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0283 Ahy-Chr20 2973063 2974427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0283 32 263 Major Intrinsic Protein MIP AT5G37820 62.931 3.08e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0283 K09874 - gmx:100812577 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0283 20 2973063 2974427 Ahy20g0283 20 2973063 2974427 ECH
Ahy20g0283 20 2973063 2974427 Ahy10g0093 10 997258 998935 hybridization
Ahy13g4592 13 146281865 146285183 Ahy20g0283 20 2973063 2974427 PCT
Ahy3g4339 3 143388314 143392688 Ahy20g0283 20 2973063 2974427 PCT
Ahy20g0283 20 2973063 2974427 Ahy13g4592 13 146281865 146285183 PCT
Ahy20g0283 20 2973063 2974427 Ahy3g4339 3 143388314 143392688 PCT