Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0178 ATGGGTATTGGAGGAACCACCTCCGCCAGCTGCAGCGATGAAGGCAACATGCCTCCCTACTATGGAACCTTTCAAGGCGTCGCTAACTTCTATCCTCCTCAGCCCTCGTCCTCCCATAATTCTTACCAAGGATACACCCTCCTTCCCGTTTATGCTGTTCTTGAGGGACACCCCATAAGAGAACGCCGTCTTCCTTGCTGCGGACTTGGTCTGGGTTGGTGCATGTTTATACTGGGATTCTTTCTTGGGGGCATTCCCTGGTATTTCGGAACTTTCTTGCTACTATGTACGCGGGTGGATTACCGAGAAAAGCCTGGATTGATTGCGTGCACAATTGTTTCCCTCATAATTGTGATAGCCATTACCCTTGGCTCGAGTCATCGACATTTTGTTTGGTGGACATGA 405 0.4963 MGIGGTTSASCSDEGNMPPYYGTFQGVANFYPPQPSSSHNSYQGYTLLPVYAVLEGHPIRERRLPCCGLGLGWCMFILGFFLGGIPWYFGTFLLLCTRVDYREKPGLIACTIVSLIIVIAITLGSSHRHFVWWT* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0178 134 PANTHER 60S RIBOSOMAL PROTEIN L18A-LIKE PROTEIN 38 132 - -
Ahy20g0178 134 PANTHER 60S RIBOSOMAL PROTEIN L18A-LIKE 38 132 IPR044804 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0178 Ahy-Chr20 1533039 1535944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0178 20 132 Cytoplasmic Ribosomal Protein Gene Family AT1G29970 33.149 3.43e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0178 - - ahf:112714307 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0178 20 1533039 1535944 Ahy20g0178 20 1533039 1535944 ECH
Ahy20g0178 20 1533039 1535944 Ahy10g0013 10 220752 223440 hybridization