Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0177 ATGGTTACCTTCAGGTTCCACCAATACCAGGTCGTCGGGAGGGCTCTCCCTACTGAGTCAGATCAGCACCCTAAGATTTACCGCATGAAGCTCTGGGCTACCAATGAGGTTCGCGCAAAGTCCAAGTTCTGGTATTTTCTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAGGTCCTTGCCATCAATGAGATTTTTGAGAAGAACCCAACCAAGATCAACAACTATGGTATCTGGTTGCGCTATCAAAGTCGGACAGGGTACCACAATATGTATAAGGAGTATCGTGACACCACTCTAAATGGTGCTGTTGAGGCGATGTACAATGAGATGGCTTCTCGCCACAGGGTTAGGTTCCCCTGCATTCAAATTATCAAGACTGCCACCATTCCAGCTAAGCTTTGCAAGAGGGAGAGCACCAAACAATTCCACAACTCCAAGATTAAGTTCCCATTGGTCTTCAAGAAGATTAGGCCACCAACAAGGAAGCTAAAGACCACATACAAGGCCAAGAAGCCTAACTTGTTTATGTAA 537 0.4581 MVTFRFHQYQVVGRALPTESDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKIRPPTRKLKTTYKAKKPNLFM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0177 178 Gene3D - 1 71 - -
Ahy20g0177 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Ahy20g0177 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 IPR028877 -
Ahy20g0177 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 IPR028877 -
Ahy20g0177 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Ahy20g0177 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 - -
Ahy20g0177 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 - -
Ahy20g0177 178 SUPERFAMILY RplX-like 71 146 - -
Ahy20g0177 178 Gene3D - 72 147 - -
Ahy20g0177 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0177 Ahy-Chr20 1530021 1531712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0177 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 90.449 1.87e-122 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0177 K02882 K22683 gmx:100306174 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0177 20 1530021 1531712 Ahy20g0177 20 1530021 1531712 ECH
Ahy20g0177 20 1530021 1531712 Ahy10g0012 10 216579 218381 hybridization