Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0176 ATGGAGCGGTACGGCCGGTCCAGCGAGGGTTCCCGGTCTGATCCATCGCCGGAGTGGACCGGAACTGGCCTCGAAGAGCCGGTGTGGCAAATGGGATTGGGTGCTGCAGAGGAATCTTATCCCCAAAGGCCTGATGAGGCTGATTGTATCTACTATTTGAGGACTGGATTCTGTGGCTATGGTTCCCGCTGCCGTTTCAACCATCCCCGTGACCGTGCCGCGGCTGTTGGTGCTGCTGCTAGGACTGGAGGAGGGGAGTATCCAGAGCGAATTGGCCAGCCTTTGTGCCAGTATTACATGAAGACAGGGTCATGCAAATTTGGTTCTTCCTGCAAGTACAATCATCCTAGGCAGGCTGGAGGCTCTGCTAGCCCTGTGTCACTAAATTATTATGGTTATCCATTGCGACCGGGTGAGAAAGAATGTTCCTATTATGTGAAAACTGGGAGATGCAAGTTTGGTGGAACTTGTAAATTCCATCATCCCCAGCCTGCTGGCATCCAAGTTCCAGCATCATCACTGGTTCCTCCAGTTTCACCTTTACCTGTACCAGTACCTTCACCGTTATATCAATCTGTACAGCCTCCATCTGGTCCTTCATCTCAACAAATTGGTGTACTGGTTGCAAGACCACCGCTTTTACCTGGTTCACTAGTCCACAGCCCTTACGGTCCTGTGGTTCTGTCCCCTGCCATGGTCCCTTTTTCTGGCTGGGGTCCATATCAGGCTCCTGCAGCAAGCCCCGTCCTTCCTTCTAGTACTCCATCTAATGTTGGGTCAGCACAGCTTTATGGGATAACTCAGGTGCCTTCATCACCAGCTGCCTATGCTGGACCTTATCAACCTTCCGGTTCTTCTCTTGGTCTTTCAGGCAGTAGTCAGAAAGAGCAGTCATTGCCAGAAAGGCCTGATCAGCCAGAATGTCAGCATTACTTAAAGACAGGGGAGTGTAAATTCGGTCCATTATGTAGGTATCACCATCCACCAGACATGAGTGCACCGAAAGGGAATGTAATTCTTAGTCCTGCTGGCCTTCCGTTACGTCCGGGGGCATCACCTTGCACACATTACACACAGCGTGGAGTATGTAAGTTCGGTTCTGCATGCAGATTTGATCATCCTATGGGATCATTGAGTTATAGTCCATCCACATCATCCCTGGCTGACATGCCGGTTGCACCCTATCCTGTTGGTTCTTCGGTTGGTACACTTGCTCTGTCATCTTCAACATCAGAGTTGCGGCCCGAGCTCACCTTAGGATCCATCAAGGAGTCTGTTTCATCTCGGATACCATCTTCAATGAACACATTAACCGGATCAGTCGGCTTGACTTTGTCAACGGGTGAACCTGTTTCTCAATCAAGCAGTCAACCATCTGCTCAGAGTTCCAGTACATCAGCAGCTGCTGATACTGCCACAACTAGTACTGTCTCTTGCACCACCTCAAGCTCGAGCTAA 1458 0.5041 MERYGRSSEGSRSDPSPEWTGTGLEEPVWQMGLGAAEESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRAAAVGAAARTGGGEYPERIGQPLCQYYMKTGSCKFGSSCKYNHPRQAGGSASPVSLNYYGYPLRPGEKECSYYVKTGRCKFGGTCKFHHPQPAGIQVPASSLVPPVSPLPVPVPSPLYQSVQPPSGPSSQQIGVLVARPPLLPGSLVHSPYGPVVLSPAMVPFSGWGPYQAPAASPVLPSSTPSNVGSAQLYGITQVPSSPAAYAGPYQPSGSSLGLSGSSQKEQSLPERPDQPECQHYLKTGECKFGPLCRYHHPPDMSAPKGNVILSPAGLPLRPGASPCTHYTQRGVCKFGSACRFDHPMGSLSYSPSTSSLADMPVAPYPVGSSVGTLALSSSTSELRPELTLGSIKESVSSRIPSSMNTLTGSVGLTLSTGEPVSQSSSQPSAQSSSTSAAADTATTSTVSCTTSSSS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0176 485 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Ahy20g0176 485 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 468 - -
Ahy20g0176 485 Gene3D - 121 172 - -
Ahy20g0176 485 MobiDBLite consensus disorder prediction 440 485 - -
Ahy20g0176 485 SUPERFAMILY CCCH zinc finger 45 72 IPR036855 GO:0046872
Ahy20g0176 485 SUPERFAMILY CCCH zinc finger 138 164 IPR036855 GO:0046872
Ahy20g0176 485 SUPERFAMILY CCCH zinc finger 351 378 IPR036855 GO:0046872
Ahy20g0176 485 MobiDBLite consensus disorder prediction 275 304 - -
Ahy20g0176 485 MobiDBLite consensus disorder prediction 1 24 - -
Ahy20g0176 485 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Ahy20g0176 485 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Ahy20g0176 485 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Ahy20g0176 485 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Ahy20g0176 485 PANTHER PROTEIN PHOSPHATASE RELATED 1 468 - -
Ahy20g0176 485 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Ahy20g0176 485 MobiDBLite consensus disorder prediction 283 299 - -
Ahy20g0176 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Ahy20g0176 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Ahy20g0176 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Ahy20g0176 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Ahy20g0176 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 375 IPR000571 GO:0046872
Ahy20g0176 485 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Ahy20g0176 485 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Ahy20g0176 485 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Ahy20g0176 485 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Ahy20g0176 485 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Ahy20g0176 485 Gene3D - 291 376 - -
Ahy20g0176 485 Gene3D - 41 120 - -
Ahy20g0176 485 SUPERFAMILY CCCH zinc finger 306 330 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0176 Ahy-Chr20 1513995 1520619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0176 1 450 C2H2 Transcription Factor Family AT5G18550 54.624 2.47e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy20g0176 zf-CCCH 5.50E-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0176 - - gmx:100789405 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0176 20 1513995 1520619 Ahy10g0011 10 200816 207493 hybridization
Ahy11g2533 11 141158013 141162395 Ahy20g0176 20 1513995 1520619 PCT
Ahy1g2392 1 102014146 102018674 Ahy20g0176 20 1513995 1520619 PCT
Ahy20g0176 20 1513995 1520619 Ahy11g2533 11 141158013 141162395 PCT
Ahy20g0176 20 1513995 1520619 Ahy1g2392 1 102014146 102018674 PCT