Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0174 ATGTCCACCTCCTCTGGAACCTCACAGACTTACCTCAAAGGACATGAAGAACACATGAATAATTCTTCATCATCAACTCTTATTATTCTACAACGCAACACTTCATCTTCTTGTGGCACTGAGAGAAGAGGCAGAAGAAAGCAGCAATCAGCAGAACCAGGAAGATTTCTTGGTGTGAGAAGACGGCCATGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAGAGACACTGGCTTGGAACCTTTGACACTGCTCATGAAGCTGCTCTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTGGCTTAGCAAGAACAAACTTCATCTACACAACCACACAAAACAACACCATCAATGGTAATAATCTTCTCAACTCTATGGATAATAATCCTCATCATCATCATCAACAAGTTATTTTGCCACCTTCACAAGATTATTTCCTCAACAACACTCATCAGAATTGCATCATGTCTCACCAACTTGATGATGATATTACTTCCCTTGTCCACGATGAGAACCCTTCAAAGTTGGTGATGAAGGGCGATGAGAATTTGTTCTTCTTCTCAGCCACTGATTCCACAAATTCTGGCTATCTGGAATGCATTGTTCCAGAGAACTGTTTCAGACCTATTTCTTCTAGTACTCCCACCAACAACAATAATACCTCAAACTCCTCCATGAGTGCTGCTTCAGCTCCTAGTGACCAAAATGTTGTTAGCAGCATTAACACAAACACCATGGAGGCATTGAAGCATTACTATGGTGGTGAAGAACTTGACGGTCAAGGAATATTCTGGAACAATCAGGATGAGCAACAATCATCTTGGGATTGCAATAATAAGAGTAATAATTATGGTGAACTTTCAGCTATATTTGACAAACAAGAAGGTTGCATGATGAATGCATTGTGTCCCATCATGAATGAGACTAGTCCAAGCTATGGAGTAGTAGTGACTACTCGTGAGGCTGCTATTCCTATTCCTTCAACTACTTCTCCATCAATTCCTTCTTTGGGGGATGTCTACTTAGGAATGACCTACTCGCTCTTCTAG 1062 0.4143 MSTSSGTSQTYLKGHEEHMNNSSSSTLIILQRNTSSSCGTERRGRRKQQSAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSIKGGLARTNFIYTTTQNNTINGNNLLNSMDNNPHHHHQQVILPPSQDYFLNNTHQNCIMSHQLDDDITSLVHDENPSKLVMKGDENLFFFSATDSTNSGYLECIVPENCFRPISSSTPTNNNNTSNSSMSAASAPSDQNVVSSINTNTMEALKHYYGGEELDGQGIFWNNQDEQQSSWDCNNKSNNYGELSAIFDKQEGCMMNALCPIMNETSPSYGVVVTTREAAIPIPSTTSPSIPSLGDVYLGMTYSLF* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0174 353 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Ahy20g0174 353 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Ahy20g0174 353 MobiDBLite consensus disorder prediction 216 239 - -
Ahy20g0174 353 MobiDBLite consensus disorder prediction 1 57 - -
Ahy20g0174 353 SUPERFAMILY DNA-binding domain 56 112 IPR016177 GO:0003677
Ahy20g0174 353 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 349 - -
Ahy20g0174 353 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Ahy20g0174 353 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Ahy20g0174 353 MobiDBLite consensus disorder prediction 1 38 - -
Ahy20g0174 353 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Ahy20g0174 353 Pfam AP2 domain 58 104 IPR001471 GO:0003700|GO:0006355
Ahy20g0174 353 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Ahy20g0174 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0174 Ahy-Chr20 1466952 1468489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0174 27 303 AP2-EREBP Transcription Factor Family AT5G18560 39.252 3.94e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g0174 AP2 1.10E-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0174 - - adu:107468049 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0174 20 1466952 1468489 Ahy10g0010 10 190763 191836 hybridization
Ahy11g2532 11 141155087 141156525 Ahy20g0174 20 1466952 1468489 PCT
Ahy1g2393 1 102020374 102021450 Ahy20g0174 20 1466952 1468489 PCT
Ahy20g0174 20 1466952 1468489 Ahy11g2532 11 141155087 141156525 PCT
Ahy20g0174 20 1466952 1468489 Ahy1g2393 1 102020374 102021450 PCT