Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0131 ATGAGTATTATGAGTAGTAGTAGTCATCAGTATTTGGTTCCAAACTGGAACATGAAACAACAACAACAACAAAGACAAGAACAAGAAACACTCCAATTAGAAGAGGGTATTACTATTACCAAATCTTCTCAAGCTCCTCCCACCACTCATCTTGTTCCCATGGCTAATAATTATGATGAGATTGCAGAGCTGACATGGGAAAATGGGCAGATATCAATGCATGGGCTCAGTGGGCTTGATCCAACTTCACAAAAAAAGCCCATATGGGTTAATAGGGCCCATGATACATTAGAGTCCATTGTTCAACAAGCCACATGCAACAATAAAAAGTCAAAGTTGACCATAAAAGACAACCATGCTTATGTTGATGTTCCTACCACAACAAGCTCCATTGTTGCATCCTCAGGGGAACATCATCAAATGGTGCCAACACTTTCAAGGAAAAGATCACATTCTTCTTATTCCGATCAACAACAACATCGGAGAGATGTTAATTATGTTAGCATCAATAATACTAAGAAGATGTTATTAGAAGATCATAATACTAATAATAGAAAATGTGGTGTTGCTACTGCTAGTGTCACATTTTGTAAGGACAACAATGACATCACAACCATGATGACGTGTCCTTCTCTTGACTCTGGTCCAAGAAGCTTCAAAAATGATAAGATTCTTGAGGAGGATTCTGCTTGTCAAAGTGGATCGGAGGTTCGGAATAATGAAAATGATAGAGATGGTGGGAAAGGTGAAACAGGGCAGAGCAAATCATCATCAGTTAGAAGAAGAGATAGAATTAATCAGAAGATGAAAGCATTGCAGCGGTTAGTGCCTAATGCAAATAAGACAGACAAAGCTTCAATGTTGGATGAGGTGATTAAGTACTTGAAACAACTTCAAGCACAAATAGAAATGATGATGAGTGTGAGCATGCCACAGATGATAATGCAACAACAACTTCAAATGTCTATGCTAGCAAGATCAATGGCAAACAATGCTCCAAATCCAATTAGGCCATTGTTTCCACAACTCATCCAACCAACAACAACAATTGGAGCTGCTAACACTGCCTCTGCTCCAATGTTTCTTGCACCTTCCTTGATGATGCCTTCAAGCACCAATGCTTCATTTCCTCTGCCTTCTGCTTCATATGGGACTCCTACTTTTGCACAACCACTTAATATGGATATGTTGAACAACATGGCAGCATTTTACAGCCAACAGATGAATCATCATCAGAACAATCAAATCAAACCATGA 1257 0.3898 MSIMSSSSHQYLVPNWNMKQQQQQRQEQETLQLEEGITITKSSQAPPTTHLVPMANNYDEIAELTWENGQISMHGLSGLDPTSQKKPIWVNRAHDTLESIVQQATCNNKKSKLTIKDNHAYVDVPTTTSSIVASSGEHHQMVPTLSRKRSHSSYSDQQQHRRDVNYVSINNTKKMLLEDHNTNNRKCGVATASVTFCKDNNDITTMMTCPSLDSGPRSFKNDKILEEDSACQSGSEVRNNENDRDGGKGETGQSKSSSVRRRDRINQKMKALQRLVPNANKTDKASMLDEVIKYLKQLQAQIEMMMSVSMPQMIMQQQLQMSMLARSMANNAPNPIRPLFPQLIQPTTTIGAANTASAPMFLAPSLMMPSSTNASFPLPSASYGTPTFAQPLNMDMLNNMAAFYSQQMNHHQNNQIKP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0131 418 Gene3D - 255 307 IPR036638 GO:0046983
Ahy20g0131 418 MobiDBLite consensus disorder prediction 134 162 - -
Ahy20g0131 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Ahy20g0131 418 MobiDBLite consensus disorder prediction 238 263 - -
Ahy20g0131 418 MobiDBLite consensus disorder prediction 228 263 - -
Ahy20g0131 418 SMART finulus 256 304 IPR011598 GO:0046983
Ahy20g0131 418 Pfam Helix-loop-helix DNA-binding domain 260 299 IPR011598 GO:0046983
Ahy20g0131 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 311 IPR036638 GO:0046983
Ahy20g0131 418 PANTHER TRANSCRIPTION FACTOR PIF7 17 414 - -
Ahy20g0131 418 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 414 IPR031066 -
Ahy20g0131 418 MobiDBLite consensus disorder prediction 134 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0131 Ahy-Chr20 1056086 1060573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0131 60 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 31.429 5.75e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy20g0131 HLH 3.10E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0131 - - aip:107624044 786.949