Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0125 ATGAGATTGACACAAGGAATTGGAAAAAGTTCATTTGAGATCATGGATGGTAGGTGCAGGAAAGAGGAGAATACAATGGCAGTGGAAATTGCAATCCAGAGAGAGCTGGCACATAGGAAGAAGGTGGCAGCACCACATTTGAGATCACCAAATTCTAATTCCACTAAGGAGGTTTTTCCTTTACAGGTTAAATCACCAAGTCAAGCATTACCAGGTTCAACTCCAAGGCTATCTTTGAGTCAACACCTTTCTGGAACCAAGAGAAAGAAAACATTAGTCAATGCAGAGGCAGATAATAGTGTGTACTGCAAAATCTGCCAAGTATCTTGCTCAAGTCCATTCAATCTCAAGCAGCATTTGATAGGCCACAAGCACAGGGAGAAGCTGCTAGAACTCGAATCCGGCGAGAAAGATGGAACAAGTGAGAGTAATAGAAGCTATGAGAGGCAATGGTGTGATATATGCAAAGTTTCATGTATGAATGAAGAGTTGCTGAAGCTTCACTTTCAAGGTAAAAAGCACAAGGCTCAATTACAGAGGTTGGAATTTGATCAGCAAGGTGGTGTGCAGCTTCAAAATAAGCAACAAAAATGGTGTGAACTATGCAAATTATGGTGCATTGATGAGTTTTCATTCGAGCAACATCTTCGAGGTAGAAAGCACATCTTGCAGCTGCATGCTATGGAGAAAGAAAAAAACAAATTAAAAGAGAAAGATGCATTGATCTTATGA 732 0.403 MRLTQGIGKSSFEIMDGRCRKEENTMAVEIAIQRELAHRKKVAAPHLRSPNSNSTKEVFPLQVKSPSQALPGSTPRLSLSQHLSGTKRKKTLVNAEADNSVYCKICQVSCSSPFNLKQHLIGHKHREKLLELESGEKDGTSESNRSYERQWCDICKVSCMNEELLKLHFQGKKHKAQLQRLEFDQQGGVQLQNKQQKWCELCKLWCIDEFSFEQHLRGRKHILQLHAMEKEKNKLKEKDALIL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0125 243 SUPERFAMILY beta-beta-alpha zinc fingers 98 130 IPR036236 -
Ahy20g0125 243 SUPERFAMILY beta-beta-alpha zinc fingers 193 228 IPR036236 -
Ahy20g0125 243 MobiDBLite consensus disorder prediction 42 85 - -
Ahy20g0125 243 Pfam Zinc-finger of C2H2 type 151 174 - -
Ahy20g0125 243 Pfam Zinc-finger of C2H2 type 198 221 - -
Ahy20g0125 243 Pfam Zinc-finger of C2H2 type 102 125 - -
Ahy20g0125 243 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 45 231 - -
Ahy20g0125 243 PANTHER ZINC FINGER RNA-BINDING PROTEIN 45 231 - -
Ahy20g0125 243 SMART ZnF_U1_5 147 181 IPR003604 GO:0003676|GO:0008270
Ahy20g0125 243 SMART ZnF_U1_5 194 228 IPR003604 GO:0003676|GO:0008270
Ahy20g0125 243 SMART ZnF_U1_5 98 132 IPR003604 GO:0003676|GO:0008270
Ahy20g0125 243 SMART c2h2final6 197 221 IPR013087 -
Ahy20g0125 243 SMART c2h2final6 150 174 IPR013087 -
Ahy20g0125 243 SMART c2h2final6 101 123 IPR013087 -
Ahy20g0125 243 SUPERFAMILY beta-beta-alpha zinc fingers 142 182 IPR036236 -
Ahy20g0125 243 Gene3D Classic Zinc Finger 191 238 - -
Ahy20g0125 243 Gene3D Classic Zinc Finger 93 139 - -
Ahy20g0125 243 Gene3D Classic Zinc Finger 140 190 - -
Ahy20g0125 243 MobiDBLite consensus disorder prediction 47 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0125 Ahy-Chr20 1016687 1019556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0125 76 243 C2H2 Transcription Factor Family AT5G61190 24.365 2.26e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy20g0125 zf-met 2.10E-07 CL0361