Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0117 ATGGCTGCTCCGTCGTCTCCTTCTCCCTTCCACGACGCCCTTCCCGATGTCAATGACTATGTCTGGGAAAAAGAATCAGACGGATTGCCGTGGGACACACTTCGCCATGTTTACGAGCTTGTGCAGAGTGGCAATGAAGCATTTCGAGAGAATAGAATGGAAGAGGCAATCAGCTTTTATTCGCGAGCCAATAACATTAAATCTGGTGATATGGTCATCCTCGGCAATCGCTGTGCAGCTTATATTAGGATTAGTCAATATTTAAAGCATAGAACTCCATCGGCTTCGGAACATAGACCATTGAGTGGGCTTGATCCTACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTGCAAAGTAATTCAGCTAATCCTTACATTTTAAAGGCCCATGCACTTCTTTTGTTGGAGAAATATGAGAAAGCCAGGGATGTTATTCTTTCCGGTCTACAAGTCGATCCATTTAGCAATCCTCTTCAAGCTTCTCTTCGAAATTTGGAAAGACTGCCATCTCATTCAACAAGGATGGATAGACATGCACAACCAGAGCGAAACGATGAGTTTGATTGCACTCTCTGCCTGAAGTTGCTGTATGAACCTGTTACAACCCCTTGTGGACATTCCTTTTGCCGTTCATGTCTATTTCAGTCAATGGATTCTGGGAACAGATGCCCTTTGTGCAGGACAGTTCTGTTTATTAGTCCAAGAACATGTTCAATCAGTGTGACATTGAAGAACATCATAGAGAAGAACTTTCCTGAGGAGTATGCAGAACGGAAACAAGAGCATGACAGTTTAATCAACCCTGGTGTAGATTTGCTGCCCCTCTTTGTTATGGATGTTGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGATTGATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATCACTGATTCTTCAACAGGTTCCTTAGCCGAGTATGGCTGTGAAGTGGAAATCACTGAGTGTGAGCCACTTCCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATCATCCGTTCATGGGATCAGGATGGGTATCGTGTTGCTCAGGTTGAATGGGTTCAGGATATTATGCCAGCAGAAGGGACAAAAGAAAGAGAGATTTTACAGGAATTGACATGTAATGCAGCAGAAAATGCTCGATCGTGGATAAGAAGAGCTAGAGAAGCAACAAGACTAGATCCAAGAAGAATCGAGAGACTCCTGAATGTTGAAGCGATGATGCCATCGACACGAGACCCTGAGCGTTTCAGTTTTTGGCTGGCTACCCTATCGAACCGAAGGCCTTCGGACAGATTGGATCTCCTTCGCATAAGAGATACCACAGAGAGGATTAGACGAGGCCTTATATTTCTTAGAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1458 0.439 MAAPSSPSPFHDALPDVNDYVWEKESDGLPWDTLRHVYELVQSGNEAFRENRMEEAISFYSRANNIKSGDMVILGNRCAAYIRISQYLKHRTPSASEHRPLSGLDPTTLAELGLKDAEKLVDLQSNSANPYILKAHALLLLEKYEKARDVILSGLQVDPFSNPLQASLRNLERLPSHSTRMDRHAQPERNDEFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDSGNRCPLCRTVLFISPRTCSISVTLKNIIEKNFPEEYAERKQEHDSLINPGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVITDSSTGSLAEYGCEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAQVEWVQDIMPAEGTKEREILQELTCNAAENARSWIRRAREATRLDPRRIERLLNVEAMMPSTRDPERFSFWLATLSNRRPSDRLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0117 485 Gene3D - 277 379 IPR046336 -
Ahy20g0117 485 SUPERFAMILY PUA domain-like 279 475 IPR015947 -
Ahy20g0117 485 SMART ring_2 195 232 IPR001841 -
Ahy20g0117 485 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 13 478 - -
Ahy20g0117 485 ProSiteProfiles Lon N-terminal domain profile. 276 477 IPR003111 -
Ahy20g0117 485 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Ahy20g0117 485 Gene3D Tetratricopeptide repeat domain 35 173 IPR011990 GO:0005515
Ahy20g0117 485 SMART lon_5 278 477 IPR003111 -
Ahy20g0117 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 273 IPR013083 -
Ahy20g0117 485 SUPERFAMILY RING/U-box 189 258 - -
Ahy20g0117 485 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 475 IPR003111 -
Ahy20g0117 485 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Ahy20g0117 485 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Ahy20g0117 485 SUPERFAMILY TPR-like 37 165 IPR011990 GO:0005515
Ahy20g0117 485 PANTHER RING FINGER PROTEIN 127 13 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0117 Ahy-Chr20 933427 939259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0117 193 240 C3H Transcription Factor Family AT2G42030 41.509 6.16e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0117 - - gmx:100802277 771.155