Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0090 ATGCCGAAGGTTAAAGCCGACGCGAAAGCTGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAACGGGAAGGAAGCAGGCTAAGAAAGCTAAGGATCCTAACAAGCCTAAGAGGCCTCCCAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAGTACAAGAAGGAGCACCCAAACAACAAATCCGTTGCAGTTGGCAAGGCTGGTGGTGACAGGTGGAAATCAATGTCTGATGCTGATAAAGCTCCCTACCAGGCTAAGGCAGAGAAAAAGAAAGAGGAGTATGAAAGGACTATGCAAGCCTACAACAAAAAACAGGAGAGTAAGGGTGCTTCTGAGGAAGATGAATCTGACAAGTCAAAGTCTGAAGTAAATGATGATGATGATGATGAGGATGATGATGATGATGAGTGA 417 0.4652 MPKVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNKSVAVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERTMQAYNKKQESKGASEEDESDKSKSEVNDDDDDEDDDDDE* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0090 138 Coils Coil 86 109 - -
Ahy20g0090 138 Gene3D High mobility group box domain 20 122 IPR036910 -
Ahy20g0090 138 PRINTS High mobility group (HMG1/HMG2) protein signature 51 69 - -
Ahy20g0090 138 PRINTS High mobility group (HMG1/HMG2) protein signature 88 108 - -
Ahy20g0090 138 PRINTS High mobility group (HMG1/HMG2) protein signature 69 88 - -
Ahy20g0090 138 Pfam HMG (high mobility group) box 36 104 IPR009071 -
Ahy20g0090 138 MobiDBLite consensus disorder prediction 1 138 - -
Ahy20g0090 138 SMART hmgende2 35 105 IPR009071 -
Ahy20g0090 138 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 136 IPR031061 -
Ahy20g0090 138 MobiDBLite consensus disorder prediction 121 138 - -
Ahy20g0090 138 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 104 IPR009071 -
Ahy20g0090 138 CDD HMGB-UBF_HMG-box 36 86 - -
Ahy20g0090 138 MobiDBLite consensus disorder prediction 1 36 - -
Ahy20g0090 138 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 136 - -
Ahy20g0090 138 SUPERFAMILY HMG-box 22 105 IPR036910 -
Ahy20g0090 138 MobiDBLite consensus disorder prediction 74 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0090 Ahy-Chr20 737632 739377 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ahy20g0090 HMG_box 1.80E-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0090 K25507 K22507 ahf:112797235 196.438