Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0020 ATGGATGAAAAAGCTAAGTCCTCAGATCATGTTGCTGTCACCATTGACCAGCACAATAACCATCCGAAAACCCCTTCCTCTTCCTCCGTGGACAACAAGCCCCCCAAACAACAACCCTTGAGGGTCAAAACCCTTAATCGGCTCAGCTTCTCGAAGCCCAAATCCAGAATCCTCGAGTACAATAACTACTATCCCCACCACCATCTCGGCAGAAAGCTATCAAGCATTTCGCAGGAGAACAACAACGACAATAATAATGAGGACGTGGACGAAGATGAAGAGGAAGAGGAGGAGTGGTGGGACGAAGAAGAAGAGATCGAGGAGGAGGGTGAGGGAGAGAGGAATAAGTTGCAGGAGAGGAGGAGGAGGAAGAAGGTGAGGTGGAGGGTAGTGGTGGAGTGGGTGGTGTTCCTGAGCATAGCAACATGCTTGGTGTGTTCGCTGGCAATAACGAGGATAAAGAAGATGCACATGGTGGGTTTGGAGATATGGAAGTGGTGCTTGATGGTGATGGTGACATTCAGCGGGAGGTTGGTGTCGGGGTGGGTGGTGGGGGTGACGGTGTTCGTGATAGAGAGGAACTTCATGCTGAGAGAGAAGGTGCTGTACTTCATATACGGGCTGAGGAAGAGCATAAGGAACTGCATGTGGCTAGGGCTGGTGCTTCTTTCATACTGGAGCGTGGTGTTCGACGACGTGCAGAAGAAGAACCACATGTTCCTGAACAAGGTGTTTCAGGGACTGGTGGCAGTGCTGGTTGGGGCCATCATATGGCTCGTCAAGATTGTTCTGGTGAAGATGCTGGCATCCTCTTTTCATGTGGCCACCTACTTCGACAGGATGAAGGAGAGCGTCTTCCATCACTACATCCTCGACACTCTCTCAGGTCCGCCCATGGAGGACGCGGAGGAGATACTGCAGCAGCACCGCCTGCTCACGGGAGGCGGATCAAAGTCGATGCCTGCCAGGAGTAGGTTGAATAAGCTGAAGGAGAAGCAGGAGAGGTTCGGGGGTTCCAGGAGGATTGACATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCACTGCATCCGCCTGGAGCGTCAAGAGGCTCGTCAACTATGTTCGCTCTTCCGGCCTCTCCACCATCTCCAGGACCGTCGATGATTTCACCACCGCCGAGTCTGAGATCAACAGTGAATGGGAAGCTAGAAATTGCGCTCAGCGGATTTTCAACAACGTCGCCAAACCTGCTGCCAAGTACATTGAAGAGGAGGATTTGATGAGATTTCTGAAGAGGGTTGAGATACATACTATATTCCCTCTCTTCGAAGGTGCCCTTGAAACAGGGAAGATCAGCAGATCATCATTTAGAAATTGGGTGATTCGAGCATACTACGAACGAAAGGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAACTAGCAAGCGCGATAGTTAGTGTGATAATAATCATTGTGATCCTTTTGGTGATGGGAGTGGCTACGCTCAAGATCATATTCTTCTGCATGACGCAAATCGTGTTGATTGGGGTTGCCTTCCAAGGTACCTGCAAGACCGTCTTGGAGGCCATCATCTTCGTCTCTGTCATGCATCCTTTCGACATTGGAGACCGCTGCGTCATTGATGGTGTTCATATGATTGTGGAAGAGATGAATATCTTGTCAACAGTGTTTCTCAGATACGACAACGAGAAAATATACTACCCTAATGCAGTTCTGCTGAATAAGCCAATCAGCAATTTCTACAGGAGTCCGGAGATGTGGGACTCAATTGATTTCACCATTGATGCTTCTACTCCCATGGAGACTATCATTGCACTCAAGAAATCAATACAAATTTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGCAAAAGAAATACAGAATGTGGACAAGCTGAAGCTGTGCTTGTGTGTGCAACACACAATCAATCATCAGAACTATGGCGAAAGGAGCATTAGGATCACTGAGCTCCTCTTGGAACTCAAAAAGATCTTTGAGATCCATGCTGTCAAGTACAATCTCCTCCCTCAGGAGATCCACATTACCCAGATGAACATGGAAAATAATGGCAGACTTGTCTTTCAATCATGA 2133 0.4834 MDEKAKSSDHVAVTIDQHNNHPKTPSSSSVDNKPPKQQPLRVKTLNRLSFSKPKSRILEYNNYYPHHHLGRKLSSISQENNNDNNNEDVDEDEEEEEEWWDEEEEIEEEGEGERNKLQERRRRKKVRWRVVVEWVVFLSIATCLVCSLAITRIKKMHMVGLEIWKWCLMVMVTFSGRLVSGWVVGVTVFVIERNFMLREKVLYFIYGLRKSIRNCMWLGLVLLSYWSVVFDDVQKKNHMFLNKVFQGLVAVLVGAIIWLVKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEDAEEILQQHRLLTGGGSKSMPARSRLNKLKEKQERFGGSRRIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFTTAESEINSEWEARNCAQRIFNNVAKPAAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVILLVMGVATLKIIFFCMTQIVLIGVAFQGTCKTVLEAIIFVSVMHPFDIGDRCVIDGVHMIVEEMNILSTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDSIDFTIDASTPMETIIALKKSIQIYIESKPKYWNPKHSVIAKEIQNVDKLKLCLCVQHTINHQNYGERSIRITELLLELKKIFEIHAVKYNLLPQEIHITQMNMENNGRLVFQS* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0020 710 PIRSF Memb_At2g17000 2 707 IPR016688 -
Ahy20g0020 710 MobiDBLite consensus disorder prediction 84 110 - -
Ahy20g0020 710 SUPERFAMILY Sm-like ribonucleoproteins 530 588 IPR010920 -
Ahy20g0020 710 MobiDBLite consensus disorder prediction 1 48 - -
Ahy20g0020 710 MobiDBLite consensus disorder prediction 12 35 - -
Ahy20g0020 710 Gene3D - 539 588 IPR023408 -
Ahy20g0020 710 MobiDBLite consensus disorder prediction 75 117 - -
Ahy20g0020 710 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 703 - -
Ahy20g0020 710 Pfam Mechanosensitive ion channel 480 683 IPR006685 GO:0016020|GO:0055085
Ahy20g0020 710 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 703 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0020 Ahy-Chr20 181562 187389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0020 8 699 Mechanosensitive Ion Channel Family AT5G12080 42.297 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0020 K22048 - gmx:100813521 1004.59