Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0006 ATGAGCTTTCAGGACATAGAATCTGGCCGTCCCTTCGGTGGTTCGAGGCGTGGCCTCATCAATGGGAAGCAATATCCTACACAAGCGGTGGCAGCCGGCATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGGCTCGTCAACACCCTTGGAACCCCCAAAGACACCCCCGAGCTCCGTGAGAAGCTCCACAAGACAAGGCTGCATATTGGGCAGTTGGTGAAGGACACATCAGTCAAGCTAAAGCAAGCTAGTGATATGGATCACCAAGTTGAAGTTAATCCAAGCAAGAAGATAGCAGATGCCAAACTCGCAAAAGATTTTCAGGCTGTGCTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCTGAGAGAGAAACAGCGTATACTCCTTTTGTTCCACAAGCAGTTCTTCCTTCTAGCTATACAGCTAGTGAAGTAGATACTAGTTCTGATACGACTCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATCGGCGAGGTTAATGAGATTTTCAAAGATCTTGCTGTGCTCGTCCATGAGCAAGGAGCCATGATTGATGACATTGGCTCCAACATTGAGAACTCTCATGCTGCAACCGCACAAGCAAAATCTCAACTTGCCAAAGCTTCAAAAACCCAAAGATCAAATTCGTCTTTGACATGTTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATCGTCATCATAGTTCTGGCCGCCTAG 825 0.4679 MSFQDIESGRPFGGSRRGLINGKQYPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSVKLKQASDMDHQVEVNPSKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDTSSDTTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0006 274 SUPERFAMILY t-snare proteins 27 236 IPR010989 GO:0016020|GO:0016192
Ahy20g0006 274 MobiDBLite consensus disorder prediction 1 20 - -
Ahy20g0006 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Ahy20g0006 274 Gene3D - 175 274 - -
Ahy20g0006 274 SMART SynN_4 14 128 IPR006011 GO:0016020
Ahy20g0006 274 CDD SynN 28 150 IPR006011 GO:0016020
Ahy20g0006 274 Gene3D - 23 134 - -
Ahy20g0006 274 CDD SNARE_Qa 201 242 - -
Ahy20g0006 274 PANTHER SYNTAXIN 6 273 IPR045242 -
Ahy20g0006 274 Pfam SNARE domain 218 269 IPR000727 -
Ahy20g0006 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ahy20g0006 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Ahy20g0006 274 SMART tSNARE_6 176 243 IPR000727 -
Ahy20g0006 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 6 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0006 Ahy-Chr20 66391 71192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0006 1 262 SNARE and Associated Proteins AT5G46860 79.389 9.62e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0006 - K08488 gsj:114391232 412.149