Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g3010 ATGACCCTTAAGGGTGGAACCACACAGGCCTGCGCTGCATGCAAATTTCAGAGAAGAAAGTGCACTCCTGAGTGTCTTCTTGCACCATACTTCCCTGCAGACCAACCAAAAGTGTTCCTTAATGTCCACAAGCTATTTGGGGTGAGCAACATTGTGAAAATATTAAAGGACGTGGATCCTAGTCAGAAGAAGAATGCTATGGAGTCCATCATCGTTCAAGCTAGTTATCGCGATAAGTACCCGGTTCGTGGTTGCGTGGAAGAAATTTGCAGGCTGCAAAACCAAATTTGGCTGCACGAAGAAGAGCTTCATGCTGTGTATCAGCAGCTTGAGATGTGCAGGCAACACCAACAGCAGCAGCACCAAGGGATTCATCACGTTGTTCCTGATGATCTTGCATCACAGTTAGAGGTGGGAATGGCGCCACGCGCTGCCAACAATGCTCTTCCGCTGTTTAATCACGCGCCACAGCCCCAGCAGCAGCAGCAACAGGTTTACAATACTTCTGTGGCTGCTTTGCCTGTGTCACAGCAACATTCATATTCCAACAGCAACAGTGTGGATTATAACTCCCTTTACATTGAATCCAAGGAAAACAACAATAATGGAACAAATCCTTTGTGGGTACCTTATGCAAATAACAATGGAAGTCCCATAGCAATGCAGTCTCAGATGGTTACCTCACAGGCACTATCCATGCACCAAGAAGCTGCTGGGGATTATGATGAGATGCATCCATTTTTCGAAACGATTGATGATAGGCAATCATATATTTATTCCAAGGAGGCTTATGAATCAAGCTCAGAAGAATCACTGAAAGATTCAAGAAAGTGCACCGAGCACGTTGCTGAGAATGAATTGAAGAGTGCTGCCGCATGCTTCAGCCTTACCAGTGTCAACTAA 903 0.4563 MTLKGGTTQACAACKFQRRKCTPECLLAPYFPADQPKVFLNVHKLFGVSNIVKILKDVDPSQKKNAMESIIVQASYRDKYPVRGCVEEICRLQNQIWLHEEELHAVYQQLEMCRQHQQQQHQGIHHVVPDDLASQLEVGMAPRAANNALPLFNHAPQPQQQQQQVYNTSVAALPVSQQHSYSNSNSVDYNSLYIESKENNNNGTNPLWVPYANNNGSPIAMQSQMVTSQALSMHQEAAGDYDEMHPFFETIDDRQSYIYSKEAYESSSEESLKDSRKCTEHVAENELKSAAACFSLTSVN* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g3010 300 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Ahy1g3010 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 276 - -
Ahy1g3010 300 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Ahy1g3010 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 4 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g3010 Ahy-Chr1 112196771 112198058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g3010 1 263 AS2 family AT3G47870 38.558 4.15e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy1g3010 LOB 3.50E-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g3010 - - lang:109357116 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1832 11 118583413 118585030 Ahy1g3010 1 112196771 112198058 hybridization