Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2980 ATGAAAAATGCGACATTCCTTAGTGAAGACAACCAGGCTCATTTTCTTGGACTAAAACGAAATCTCATTCCTCAAGCAACTCTGTTTTCTTTTGTGGAGCTGATTTTAACTATCATAAAATTTCTCTCAGAGATGTTTCACTTTTATTGGATCAAGGATTCAAGACACAAACGCACTGCTTCTTTCACCCATTGTCAAATGACATGTCCATATGTGGCTATGATATGGAAGAAAAAGCTGCAAGGACTTATGATCTTTGCAGCCCTTAAGTATTGGGGACCTTCAACACACATAAACTTCCCAAACTTGTTATGTGGGTTGTGCAATTGGGAATGTGATAAGGATACTGTTAGAGAGGGCAAGCACGTTTTTGGTGTTGCTCACATTTTTGCATCATTCAATGACACCTTTATTCATGTGACTGATTTGTCGAGAAAGAAAACCCTTGTCCGCATCACTCGCAAAAAATTTGTTTAA 477 0.3816 MKNATFLSEDNQAHFLGLKRNLIPQATLFSFVELILTIIKFLSEMFHFYWIKDSRHKRTASFTHCQMTCPYVAMIWKKKLQGLMIFAALKYWGPSTHINFPNLLCGLCNWECDKDTVREGKHVFGVAHIFASFNDTFIHVTDLSRKKTLVRITRKKFV* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2980 158 Gene3D Ribosomal protein S11 109 157 IPR036967 GO:0003735|GO:0005840|GO:0006412
Ahy1g2980 158 Pfam Ribosomal protein S11 125 153 IPR001971 GO:0003735|GO:0005840|GO:0006412
Ahy1g2980 158 PANTHER BNAA05G27530D PROTEIN 117 153 - -
Ahy1g2980 158 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 117 153 IPR001971 GO:0003735|GO:0005840|GO:0006412
Ahy1g2980 158 SUPERFAMILY Translational machinery components 120 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2980 Ahy-Chr1 111570814 111577233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2980 116 153 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 81.579 3.57e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2980 K02955 - adu:107467859 322.783