Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2974 ATGGGATCTGAGAATCAGACTCCGATGACTGAGACTTCAAAAAACAGGTCTTCTGGTAAAACAAACCAGGGGAAAGTCCCTAAGAGGATCCACAAGGCTGAAAGGGAGAAAATGAAGCGGGAACATTTGAATGAGCTCTTTCTTGATCTTGCCAATGTACTTGATCTAAATGAGCAGAACAACGGAAAGGCTTCTATATTGAACGAAACTGCTAGGCTGCTAAAGGACTTGCTCTGTCAGATTGAGTCCCTCAAGAAGGAGAACTCGTCTCTATTGTCTGAATCTCACTATGTTACCATGGAGAAAAATGAGCTAAAGGAGGAGACTTCCAGTCTAGAAACTCAAATCGAGAAACTTCAAGTCGAGATACAAGCGAGAGTAACTCAGTCTAAACCTGACCTGAATGCACCTCCCCACGTGGAAATCGAGCAATCGGAGCAGGCAAATTTTACGGGGCAGAGTCTCCAATTCCCTCCCATGGAACCCAACTTGCAGCAAGGACCTGCAGTTTTTGTTGTCCCCTATCGCCCTGGTTTCCAAGCTGCTTTCTCAGCTCCTAACGTCGCTGAGGTCACTCCAAAACCTTCATCTGCCATCAGTAAACCGCATGCCCGGTATCCAACGCCAGCAGATTCATGGCCTTCATTGCTGCTTGGACAGCAACCAACCTCAAGTTGA 678 0.4676 MGSENQTPMTETSKNRSSGKTNQGKVPKRIHKAEREKMKREHLNELFLDLANVLDLNEQNNGKASILNETARLLKDLLCQIESLKKENSSLLSESHYVTMEKNELKEETSSLETQIEKLQVEIQARVTQSKPDLNAPPHVEIEQSEQANFTGQSLQFPPMEPNLQQGPAVFVVPYRPGFQAAFSAPNVAEVTPKPSSAISKPHARYPTPADSWPSLLLGQQPTSS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2974 225 MobiDBLite consensus disorder prediction 1 24 - -
Ahy1g2974 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 92 IPR036638 GO:0046983
Ahy1g2974 225 PANTHER TRANSCRIPTION FACTOR BHLH47 6 224 - -
Ahy1g2974 225 Coils Coil 102 122 - -
Ahy1g2974 225 Gene3D - 24 99 IPR036638 GO:0046983
Ahy1g2974 225 MobiDBLite consensus disorder prediction 1 32 - -
Ahy1g2974 225 Coils Coil 67 94 - -
Ahy1g2974 225 PANTHER TRANSCRIPTION FACTOR BHLH47 6 224 - -
Ahy1g2974 225 MobiDBLite consensus disorder prediction 189 225 - -
Ahy1g2974 225 CDD bHLH_AtILR3_like 32 106 - -
Ahy1g2974 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 77 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2974 Ahy-Chr1 111426626 111429036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2974 5 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 49.367 2.90e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2974 - - mtr:MTR_4g108360 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1887 11 123579961 123582347 Ahy1g2974 1 111426626 111429036 hybridization