Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2953 ATGGGAAGAGTTAAATTAAAGATAAAGAAATTGGAGAGCACCAGCAATCGCCAAGTGACTTATTCAAAGCGGAAAAGCGGAATCTTGAAGAAAGCAAAGGAATTGTCAATACTATGTGATATAGATATTGTTCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTGCTACAAGGAGAGCGCAGCAATATTGAGGAAGTCATTGCAAAATTTGCTCAACTTACCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGCACTAAAGAAAACCTTCAAGAAATTGGATCACGATGTAAAAATACAAGATTTCTTGGGTTCAAGTCAAACTGTGGAGGAATTAACTCATCAAGTAAGGCTTCTACAAACGCAGCTAACAGATGTACATCAGAGACTGAGCTATTGGAATAATATTGACAAGATCAATAGCATAGAACACCTTAGGCAAATGGAAGAATCACTCAGGGAATCAATTAATCGAGTGTGTTTACAGAAGGAAAATTTGGGAAAGCACCAAATAATGTCTCTTGAATGTGCCAATCAGTTACAGGATGGAATGACTTTACCCTTGATGATGGCTGGTCTGCAAGAAAACCAACCATTGTCTTGGCTTTTGAATAACGATAACCATCAGTTGATGTTGCCGAGCGAACCGAAATATCTGCAATATAGCGATAATACCAATAGAGAAGCTGAGCGCTCAACTGATGTTTCGCTCCCTGGATACTCCAGTTACATTGCCAATAATGGCAAACTTGACAGCTCTCCCCAAGTCAATACCATAGGTCAGGCAGGCAGTGGCTTGAATGAGTTGAACGGCACTGCTTGCTTAAATATACAACGTTGTGAGCAATTTGCATACCCTCCTCCTCCTCCTCCTCCTCCAGATAATGAGGAAGTGAAACATCGCACGACAATGTATAATGAGAATGGCCATGATAAACTAAATACTTCAGATTACCAAGTTCATAATGGCTTTGATTTGCCAAGATCACTGTTTGAAAACGGACACCAGTTCTGGAATTCTGCTCCTGGGCCTTGTGGGGTTGCCATGTATAACGAGAATGGCTACCATAGGTAA 1086 0.4061 MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSQTVEELTHQVRLLQTQLTDVHQRLSYWNNIDKINSIEHLRQMEESLRESINRVCLQKENLGKHQIMSLECANQLQDGMTLPLMMAGLQENQPLSWLLNNDNHQLMLPSEPKYLQYSDNTNREAERSTDVSLPGYSSYIANNGKLDSSPQVNTIGQAGSGLNELNGTACLNIQRCEQFAYPPPPPPPPDNEEVKHRTTMYNENGHDKLNTSDYQVHNGFDLPRSLFENGHQFWNSAPGPCGVAMYNENGYHR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2953 361 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy1g2953 361 Coils Coil 77 97 - -
Ahy1g2953 361 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Ahy1g2953 361 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Ahy1g2953 361 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 360 - -
Ahy1g2953 361 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Ahy1g2953 361 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy1g2953 361 Coils Coil 113 133 - -
Ahy1g2953 361 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Ahy1g2953 361 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy1g2953 361 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy1g2953 361 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy1g2953 361 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2953 Ahy-Chr1 111028114 111033176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2953 1 274 Type I MADS-box Gene Family AT2G03060 51.761 2.67e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy1g2953 SRF-TF 2.90E-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2953 - - adu:107468091 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1917 11 124660076 124665185 Ahy1g2953 1 111028114 111033176 hybridization