Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2946 ATGGGTCTCGTGTTTTGCTCCCTCTCCAAATTCTTATTATGCGCCATTTCTGGAGCTCTCACGCTGTGTTTTGCCGTAGCTGGAGCCCTTACCGGAGCTATAGCTGGTGCTTTAGCTGCTAAGGCAACTCACAGTGGTTTGCTGCGGGGAGCTTCATTGGGCGCTGTTGCTGGGGCTATACTCTCGGTGGAAATCTTGGAAGCTTCCCGTGCATATTGGTGCATGGAGCAAACTGGCTCACGGGGCACGTCATCTATGGCAGATTTCATAGAGGAACTTGTACGTGCTAGGCTTATAGAGGAATCAATTTCACCTGACATTTTAACTGCTTACAATTTGCAGTTTGAACAGGTTGCCCATGGTAATAGAGGCTACGATGAGATTCACGATGTTAATAATGTAGTAGCATCCAGAGGAATGACAAAGGATTCATTGAACAAGTTACCACAACATGTCATCTTGAAGGACATGAAAGCAGAGGATACCTGCTGTGCAATATGTTTACAGGACATTGTTGTAGGAGAAACTGCAAGAAGCTTACCACGTTGTCGTCATACATTTCACTTGACATGTGTGGACAGATGGCTAGTCAAGAATCACTCTTGTCCTGTTTGCAGACGAACTGTGTAG 630 0.4587 MGLVFCSLSKFLLCAISGALTLCFAVAGALTGAIAGALAAKATHSGLLRGASLGAVAGAILSVEILEASRAYWCMEQTGSRGTSSMADFIEELVRARLIEESISPDILTAYNLQFEQVAHGNRGYDEIHDVNNVVASRGMTKDSLNKLPQHVILKDMKAEDTCCAICLQDIVVGETARSLPRCRHTFHLTCVDRWLVKNHSCPVCRRTV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2946 209 Pfam Ring finger domain 164 206 IPR001841 -
Ahy1g2946 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 209 IPR013083 -
Ahy1g2946 209 SUPERFAMILY RING/U-box 144 209 - -
Ahy1g2946 209 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Ahy1g2946 209 SMART ring_2 164 205 IPR001841 -
Ahy1g2946 209 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 4 208 IPR044523 -
Ahy1g2946 209 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 4 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2946 Ahy-Chr1 110888757 110891934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2946 7 209 C3H Transcription Factor Family AT1G74410 51.471 5.62e-65 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2946 - - gmx:100800105 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1925 11 124856064 124859223 Ahy1g2946 1 110888757 110891934 hybridization