Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy1g2928 | ATGTATCACTCTGCAGATTCAAAGCCTCCAGCTATGGATTCACCAGTGACCCTTTTGATTAAGCACCTTCCCGAAGCTATACCTCATGACACCCTTTCTCGCCTCTTATCTCATTACGGTGCTTCCTCTCTTCGTCCTTGCTCTACTGGAAGGTTGAGGAATTGTGCTTTCGTAGATTTCAAAAATGAAATCTTGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGGCTTCTTGGTAAAGTATTGTCAGCAGAGAGAGCTAATAATCCAATGGAAAGTGGCGAAAAAGGCAGTGTAGCTCAGCTGGGAAAGGACTCTAAAGCGTCTGTGGTTAAAGATACAACTGTAACCAAAGCTATTGATGGAGATACAAAATCAGGATGTTTCCCTGTTGCTGAGCCAATTGCTGAAAGACTTGGTGTTGACTATCCATTTCCACCTCACCTTGAGTATGCTTATCCTCCGCCGGATGGAAATATATTGACCAACATTGTTAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGCCGTGCCAACACCACCACCTCCCCCTCCTCCGGTACCTTTGAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCAGAAGAGGAGGTAGAGCCAACAACAGAAAAGCCTAAGAAGCGTGCCAGGCGTGAGACAATTATTGGCCCTGCCATTGATAAAGATGTAGCTCATGAGGATGTTGGAGTAAAACCAGCCACCTTAGTCCCAAAAGAAATACCATTAATCAAGAAGAAGAACCCTGTTTTGCAGATCAATATTGCTCCCAAAGAAATTAAGGATGAGCGTAAAAATGATGACAGAAGCCAAGATTTACAGGAGCCAGAAAAAGATAGTCCAGATCCACATAAATTCTTGACTCCAGAAGAATTAGAGAGTGGAAAATTGCCTCCTGAAGAAATATTATCTCTTCCAATGTTTAAGAACTATACCACTGGAAATCCAGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGGTTGGTGAAGATTTTTTTTTAATATTCGGGTGCTTGTTTGGAAGTATTGAGACTGCCAAGTCTTGCCTTCATGTAAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCATCAATTGAGCTGGCTCATCAGGGACTGAATCTAGTGAATGGATATGTATTTAAAGGCAAGCCAATGATAATCCAGTTTGGTCGGAATCCTGGTGCCACTAAAGGAACTTGA | 1341 | 0.4258 | MYHSADSKPPAMDSPVTLLIKHLPEAIPHDTLSRLLSHYGASSLRPCSTGRLRNCAFVDFKNEILASQAQRQLHGLRLLGKVLSAERANNPMESGEKGSVAQLGKDSKASVVKDTTVTKAIDGDTKSGCFPVAEPIAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPAVPTPPPPPPPVPLKPQSADLSSGESEMESSEEEVEPTTEKPKKRARRETIIGPAIDKDVAHEDVGVKPATLVPKEIPLIKKKNPVLQINIAPKEIKDERKNDDRSQDLQEPEKDSPDPHKFLTPEELESGKLPPEEILSLPMFKNYTTGNPAPVLYIKNLAKDVVGEDFFLIFGCLFGSIETAKSCLHVKLMQEGRMRGQAFLTFPSIELAHQGLNLVNGYVFKGKPMIIQFGRNPGATKGT* | 447 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy1g2928 | 446 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 357 | 439 | IPR000504 | GO:0003723 | |
Ahy1g2928 | 446 | CDD | RRM1_RBM40_like | 17 | 88 | IPR034147 | GO:0005515 | |
Ahy1g2928 | 446 | MobiDBLite | consensus disorder prediction | 201 | 219 | - | - | |
Ahy1g2928 | 446 | MobiDBLite | consensus disorder prediction | 294 | 332 | - | - | |
Ahy1g2928 | 446 | Gene3D | - | 2 | 105 | IPR012677 | - | |
Ahy1g2928 | 446 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 83 | IPR000504 | GO:0003723 | |
Ahy1g2928 | 446 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 359 | 431 | IPR000504 | GO:0003723 | |
Ahy1g2928 | 446 | PANTHER | RNA-BINDING REGION-CONTAINING PROTEIN 3 | 10 | 444 | - | - | |
Ahy1g2928 | 446 | MobiDBLite | consensus disorder prediction | 201 | 258 | - | - | |
Ahy1g2928 | 446 | CDD | RRM2_RBM40_like | 358 | 437 | - | - | |
Ahy1g2928 | 446 | MobiDBLite | consensus disorder prediction | 296 | 332 | - | - | |
Ahy1g2928 | 446 | Gene3D | - | 352 | 445 | IPR012677 | - | |
Ahy1g2928 | 446 | SMART | rrm1_1 | 358 | 435 | IPR000504 | GO:0003723 | |
Ahy1g2928 | 446 | SMART | rrm1_1 | 17 | 86 | IPR000504 | GO:0003723 | |
Ahy1g2928 | 446 | MobiDBLite | consensus disorder prediction | 238 | 258 | - | - | |
Ahy1g2928 | 446 | SUPERFAMILY | RNA-binding domain, RBD | 16 | 440 | IPR035979 | GO:0003676 | |
Ahy1g2928 | 446 | PANTHER | UNCHARACTERIZED | 10 | 444 | IPR045164 | - | |
Ahy1g2928 | 446 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 90 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy1g2928 | Ahy-Chr1 | 110648143 | 110654809 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy1g2928 | 359 | 435 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 33.766 | 1.67e-07 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy1g2928 | K13157 | - | gmx:100818499 | 626.32 |