Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2903 ATGGCGTCGTCATCGACGTCAGCGAAGCGGTGCCACTATGAGGTTCTCGGCCTTCCCCGTGACTCCACTCCGGAGGAGATCCGCTCCGCCTACCGCCGCCTAGCCCTGCAGCGCCACCCCGACAAGCTGGTCCAATCAGGTATCTCCCAATCGGAAGCCACTGCGCAGTTTCAGGAGCTTCAGCACGCCTACGAGGTACTCTCTGATCCCAAAGAACGCTCCTGGTACGACTCTCATCGCTCTCAGATCCTCTTCTCCGATCCCGACACCCTCCGGAACTCCTCTGTCCCCGACCTCTTCTCGTTTTTCTCCAATACCGTCTTCTCCGGCTACTCCGATTCCGGTAGAGGCTTCTACAAGGTGTATTCTGATGTTTTCGATAAGATTCACGCTAATGAGATCAATTTCGTGAAGAAGTTAGGGTTAGGTGTTGATTCCATTAGGCAAGCTCCTGTTATGGGTAATTTAGATAGCCCTTACGAGCAGGTTACTGCGTTTTATGGTTATTGGTTAGGGTTTTCGACTGTTATGGATTTTTGCTGGGTTGATGAGTATGATGTTTCGGCCGGTCCAAACCGGCGGTCGCGGCGGCTTATGGAGGAGGAAAATAACAAGGTAAGGAAGAAGGCGAGGAGGGAGTACAATGATACTGTGAGGAGATTGGCTGAGTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGATGAAGAAGGAGAAGGAGGAGTTGAAGAGGAAGGAGGAGCAGAAGGAGAAGAAGAAAAGGTTGGAAAAGGAGAGGAGGGAGAGGGCAATGGCATACGAGGAGCCGGAGTGGGCGAAGGTGGATGAGGGCGAGGACGGGGAGGATGATTTGTGGTTTGAGGAGGCAGAGGAGGAGGGGAAGAAGGGTGGTGAGAAGGAATTTTATTGTGTGTTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAAGGTTGCTGAGTTTAGGGATTCGATTGAGGATGAGGATGAGGAGGTTGCTATGGAGGATTTGGAGAGTGAGATTGAGGTGGAAGGAAGAGAAGGGAAGGAAGGGTTGGAGAGTGAGGAGGATGCTGATCACGTGGTTGAGGATTTGGAGGAGAGGATTAGAGATAGTCTTAATGTTGCAGAGGAGAGCACTAGAAATGGAGTCGAGCCTGATGATGATGACGAGGAAGAATTTTATGATGCTTCACATGAAAAGGAAGGCAATGTGGTTAGTGTCTCTTTAGATGGTGGTGATGATGATGATGAAATTGGTGCTCTTGAAGCAATGATTGCAGGTCACAAGAGCAGAAAGCCACATGCTTCAACGCGCAAGCCCAATGCCCCAGTGCCTCCAACTCAAATTGAGAATGAGGATGATGGGGTTGGCCCTATGGAATACGAAAACCGGAAGGGCGCAAGAAAGAAACGCGGATCCAAGAAAGAAAAGGGTAGGAAAAATCCAGAAGAATCCTGCACAGCAGGCGTCAATGGCGATGAAGAGCATAATAACAACAACGATGATGGGAATGGCAATTCTCATGCAGAGGAGTCTTCCTTTCAATTTAACGTGGAGAATGTGATTAATGGTAAAGAGGACGAGCATGATGGTAGAGATAAGACTTCAAATAAACCAGCTGATAAGAGAGGAGATGCAAAGGACACAAAATCCAAAGCTAAAACTTCATCAAAAGGAAGAAAAGCCAAGGGTGCGTCAAAGAATCATGGCAATACTTGCGAGACCTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCAAAAATAAAAGGTAGATAG 1848 0.4816 MASSSTSAKRCHYEVLGLPRDSTPEEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVLSDPKERSWYDSHRSQILFSDPDTLRNSSVPDLFSFFSNTVFSGYSDSGRGFYKVYSDVFDKIHANEINFVKKLGLGVDSIRQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWVDEYDVSAGPNRRSRRLMEEENNKVRKKARREYNDTVRRLAEFVKKRDKRVIDMKMKKEKEELKRKEEQKEKKKRLEKERRERAMAYEEPEWAKVDEGEDGEDDLWFEEAEEEGKKGGEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSIEDEDEEVAMEDLESEIEVEGREGKEGLESEEDADHVVEDLEERIRDSLNVAEESTRNGVEPDDDDEEEFYDASHEKEGNVVSVSLDGGDDDDEIGALEAMIAGHKSRKPHASTRKPNAPVPPTQIENEDDGVGPMEYENRKGARKKRGSKKEKGRKNPEESCTAGVNGDEEHNNNNDDGNGNSHAEESSFQFNVENVINGKEDEHDGRDKTSNKPADKRGDAKDTKSKAKTSSKGRKAKGASKNHGNTCETCGEEFESRNKLHKHLGDSGHAKIKGR* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2903 615 Coils Coil 375 395 - -
Ahy1g2903 615 MobiDBLite consensus disorder prediction 336 354 - -
Ahy1g2903 615 Pfam Zinc-finger double-stranded RNA-binding 303 328 IPR022755 -
Ahy1g2903 615 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 6 615 IPR044648 -
Ahy1g2903 615 MobiDBLite consensus disorder prediction 536 569 - -
Ahy1g2903 615 ProSitePatterns Zinc finger C2H2 type domain signature. 305 327 IPR013087 -
Ahy1g2903 615 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Ahy1g2903 615 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Ahy1g2903 615 MobiDBLite consensus disorder prediction 318 335 - -
Ahy1g2903 615 Coils Coil 324 344 - -
Ahy1g2903 615 SUPERFAMILY beta-beta-alpha zinc fingers 291 348 IPR036236 -
Ahy1g2903 615 SMART c2h2final6 303 327 IPR013087 -
Ahy1g2903 615 SMART c2h2final6 585 609 IPR013087 -
Ahy1g2903 615 Gene3D Classic Zinc Finger 290 349 - -
Ahy1g2903 615 Coils Coil 230 270 - -
Ahy1g2903 615 MobiDBLite consensus disorder prediction 242 263 - -
Ahy1g2903 615 MobiDBLite consensus disorder prediction 355 369 - -
Ahy1g2903 615 Pfam DnaJ domain 12 77 IPR001623 -
Ahy1g2903 615 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Ahy1g2903 615 Gene3D DnaJ domain 1 92 IPR036869 -
Ahy1g2903 615 PRINTS DnaJ domain signature 31 46 IPR001623 -
Ahy1g2903 615 PRINTS DnaJ domain signature 13 31 IPR001623 -
Ahy1g2903 615 PRINTS DnaJ domain signature 52 72 IPR001623 -
Ahy1g2903 615 MobiDBLite consensus disorder prediction 516 534 - -
Ahy1g2903 615 ProSiteProfiles Zinc finger C2H2 type domain profile. 585 614 IPR013087 -
Ahy1g2903 615 SMART ZnF_U1_5 300 334 IPR003604 GO:0003676|GO:0008270
Ahy1g2903 615 SMART dnaj_3 10 72 IPR001623 -
Ahy1g2903 615 CDD DnaJ 11 69 IPR001623 -
Ahy1g2903 615 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 332 IPR013087 -
Ahy1g2903 615 ProSitePatterns Zinc finger C2H2 type domain signature. 587 609 IPR013087 -
Ahy1g2903 615 MobiDBLite consensus disorder prediction 318 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2903 Ahy-Chr1 110012332 110014997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2903 1 615 C2H2 Transcription Factor Family AT1G74250 49.080 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy1g2903 DnaJ 1.10E-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2903 K09506 - gmx:100788305 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2013 11 128143365 128147247 Ahy1g2903 1 110012332 110014997 hybridization