Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2899 ATGCTGCACTTCTTTGGTCGAATTGGGAATTTACTCAGAAATGCTGCAAACAAGCAGATCAGTTCAGAATTGCTCTCATCCCCATCTTATTTCCAGGCAATACGGTGCATGTCATCTGCTCCAAGCTCAAAACTGTTCATTGGAGGTGTTTCATATTCTACTGATGAGCAAGGTTTGAGGGAGGCATTTTCAAGATATGGAGAAGTTGTTGATGCAAGGATAATTGTGGATCGTGATAGTGGTAGATCCAGGGGATTTGGTTTTGTTACTTTCAGTTCAGCTGAGGAGGCATCAAGTGCTATTCAAGCCTTGGATGGACAGGATCTTCATGGTCGCCGGATTAGGGTAAATTATGCTAATGAAAGGCCCCGTGGATTTGGCGGTGGAGGTGGTGGTTTTGGTGGTTCTTATGGCAATGCACCATATGGTGCTGGTGCTGGCTATGGAAGTGCTTACGGTAACTCTCCTTATGATGGTGCTCCAGGTGGTGGTGGTGGCGGTTATGGTGGCAATGCTGCTGGAGGTTACGGTGGAGGCGGCTATGGATCTGGTGGCAATTATGGTCGCAGTGGCTATGACAATAACTATTCCACTCCTGACAGTTTTGGAAGTAGCAGTGCTGGTGGCAGTGGAGATTATGGTGGTAACAGTGGGAATTTTGGTGTTGCTGCTGGTGGTGGAGGAAGTGATAGCTATGGCAGTGCTCCTGGTTTTGATGCTGCTGCTGGTGTAGGTAGTCATGAAACATCTGCTGGTTTTGGTGGCAGTGATAATTATGCCAGTGCTGGTGGATTTGATGGAAGTGAGGGATCCGGATATGGCAGTAGTGGCCAACTGGATAACAAAGAAACCAGCATTGAAGGCGAGGATATGGACTTAGTCGAAGGAAATTACAAAGATGACAATGATGATACCGATGACTTTGCCAAAAGGGCCTGA 939 0.4707 MLHFFGRIGNLLRNAANKQISSELLSSPSYFQAIRCMSSAPSSKLFIGGVSYSTDEQGLREAFSRYGEVVDARIIVDRDSGRSRGFGFVTFSSAEEASSAIQALDGQDLHGRRIRVNYANERPRGFGGGGGGFGGSYGNAPYGAGAGYGSAYGNSPYDGAPGGGGGGYGGNAAGGYGGGGYGSGGNYGRSGYDNNYSTPDSFGSSSAGGSGDYGGNSGNFGVAAGGGGSDSYGSAPGFDAAAGVGSHETSAGFGGSDNYASAGGFDGSEGSGYGSSGQLDNKETSIEGEDMDLVEGNYKDDNDDTDDFAKRA* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2899 312 PRINTS Eggshell protein signature 127 142 - -
Ahy1g2899 312 PRINTS Eggshell protein signature 178 196 - -
Ahy1g2899 312 PRINTS Eggshell protein signature 39 55 - -
Ahy1g2899 312 PRINTS Eggshell protein signature 152 162 - -
Ahy1g2899 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Ahy1g2899 312 Gene3D - 15 138 IPR012677 -
Ahy1g2899 312 MobiDBLite consensus disorder prediction 234 312 - -
Ahy1g2899 312 CDD RRM_HP0827_like 44 120 - -
Ahy1g2899 312 SUPERFAMILY RNA-binding domain, RBD 39 150 IPR035979 GO:0003676
Ahy1g2899 312 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 3 311 - -
Ahy1g2899 312 SMART rrm1_1 44 117 IPR000504 GO:0003723
Ahy1g2899 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 115 IPR000504 GO:0003723
Ahy1g2899 312 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2899 Ahy-Chr1 109956889 109958792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2899 42 133 Eukaryotic Initiation Factors Gene Family AT2G36660 29.348 4.56e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2899 K12741 - gmx:100799124 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2017 11 128401648 128404456 Ahy1g2899 1 109956889 109958792 hybridization