Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2890 ATGAGTTCAAGCAAAAGCAGCTATCAAGCGAAGCAAGAAGACGACGGCGGTGGAGGCGGAGGCGGTGGCGGCACTAGCTCTTCAAGACAGTGGACAGCGTTCAGGAATCCAAGAATCGTTCGAGTTTCGCGGTCTTTGGGAGGGAAAGACAGGCACAGCAAGGTTTGCACCATTAGAGGTCTAAGGGACCGGAGAATTCGGCTCTCCGTTCCCACCGCCATTCAGTTGTATGATCTCCAAGACCGACTCGGCCTGGGTCAACCCAGCAAGGTCATTGATTGGTTGCTTCAAGCCACCAAACTCGACATTGATAAGCTACCGCCCCTTCAAATCCCTCCCGGTTTCGCTCAATTTCACCATCAGCAAACCCTAATTCCCCTTTCTCATCATCATCAATTCTCCCTTGGCGGCTTCTATGATGCCAATTCCTCAAGGTTTTGGGATATGGATTCTTCTTCAATTAGCCTAAAAGGTAAAGAATCTGATACTATTACTCATCCAGCTGGTGTGATATCTGAGAAAGGAAAATGGATCAAAACAAATCAACATGTTGATGAAAATCAAGACGGATTGTTGTTGCTTAACAATGCTATGGGATATAATAATTCTCCTTCAGGATTAACTTTATCATCATCCTCCTCATCTTCACAATTTGGAAGCCATGCATTATTGTTTCCTTCACAACAATTATTAGATCCTCAATTTTCATCTTCTTCTGCAACAACACCATCAACTTTCACTCCCTATTATGCTCCATTTGTAGCTAATTCGTCATCATCAACAACAACAACAATGGTGGAAAATAATAGTGATGCATTAAGGCAATTCAACCATATTCAGATCTTGAGTTCTCAAGTGATGCCTCATCCCTTTATTCCATCATCTTCTCTTTTTCACTCAATCAATAGTAATAATAATAATAATGATAATAACTCAGCTGCTGCTACTATCAGGCGTATTCCAATGCCATTTAGTTCTAAGCTTCTTGATTCAGATAACAACAACAATGAAAGTAACCAGGAAGATCATAAAGGTACGTAG 1041 0.4179 MSSSKSSYQAKQEDDGGGGGGGGGTSSSRQWTAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLLQATKLDIDKLPPLQIPPGFAQFHHQQTLIPLSHHHQFSLGGFYDANSSRFWDMDSSSISLKGKESDTITHPAGVISEKGKWIKTNQHVDENQDGLLLLNNAMGYNNSPSGLTLSSSSSSSQFGSHALLFPSQQLLDPQFSSSSATTPSTFTPYYAPFVANSSSSTTTTMVENNSDALRQFNHIQILSSQVMPHPFIPSSSLFHSINSNNNNNDNNSAAATIRRIPMPFSSKLLDSDNNNNESNQEDHKGT* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2890 346 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 344 IPR005333 GO:0003700
Ahy1g2890 346 ProSiteProfiles TCP domain profile. 48 106 IPR017887 -
Ahy1g2890 346 MobiDBLite consensus disorder prediction 1 30 - -
Ahy1g2890 346 MobiDBLite consensus disorder prediction 324 346 - -
Ahy1g2890 346 PANTHER TRANSCRIPTION FACTOR TCP17 2 344 - -
Ahy1g2890 346 Pfam TCP family transcription factor 48 140 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2890 Ahy-Chr1 109774278 109776094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2890 31 191 TCP Transcription Factor Family AT5G60970 54.545 1.18e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy1g2890 TCP 1.70E-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2890 - - cam:101498052 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2029 11 129310466 129312285 Ahy1g2890 1 109774278 109776094 hybridization
Ahy1g2890 1 109774278 109776094 Ahy20g2423 20 129506262 129508228 PCT
Ahy1g2890 1 109774278 109776094 Ahy10g1936 10 105064563 105066393 PCT
Ahy20g2423 20 129506262 129508228 Ahy1g2890 1 109774278 109776094 PCT
Ahy10g1936 10 105064563 105066393 Ahy1g2890 1 109774278 109776094 PCT