Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2889 ATGCCAGCTTTGATGTCATCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGAGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACTCAAGTATTCATTGTATGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCAAGTGTTGGTTTCCAAGGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGTAAGGTAAAGCCATTGTTGGGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGGTTCCAGTGAGAAGAAGAAAGTGTTTGGGATTGTTGAGAGGAAGAAACAACAAATCGAGGCTGCCCCATTTGCAGCAAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGACTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTGCAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCATCTATTGGTCCACTGATGAACAAAGTTTCCAAGAGTGCCAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGAGTTTGAGAAGATACTAGGAGTGGAGAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACTAGGCAGGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCGGAACTTAGTGCAGCAGGGAAGCTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAAATTGATGAGCTCTTGTCATTCAATTTTCGGGAGGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCAGACCTGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCGAGAAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCCGCTTGATACTGTCTCGCCTTCGGGCCCTATCAATTTGTCAAGGCCTTCAGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCCGGCTTTGAAACACTATTACTGTGTAGCGAGGTTACAGCATAAGGTCGATACCATGAGAAAGTGTATTCATGCCCTGGATGCAAAAGTTGTAATAGCTTTCATGAACAACACTAAGCAACTAAAGGATGTCGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCTAGAGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCAGGCCGAACTGGTCGGCTTGGTAGGGATGGTACAGTGCTGACCATATGTGAAGAGTCCGAAGTGTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTGTGGCGTTCTGCGATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 1716 0.4598 MPALMSSRFLLLVGESFPIRRALATHKNASSLLHSSIHCMSQVEPPNHGSLTLSSVGFQGEVDKPINKGGKSSSKVKPLLGSSPGSLKSKGIGKPIGSSEKKKVFGIVERKKQQIEAAPFAAKSFSELGLPLVLIERLEKEGFSVPTEVQSAAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIGPLMNKVSKSASGGDSGGKMGIEAVVVAPSRELGMQIVREFEKILGVENKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSAAGKLRTHGCRYLVLDEIDELLSFNFREDMHRILEHVGRRSGADLDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIPLDTVSPSGPINLSRPSVGSTPDPTKPSQASVESLPPALKHYYCVARLQHKVDTMRKCIHALDAKVVIAFMNNTKQLKDVVFKLEARGMKAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFIVKKMEKQLGVTVAFCDFVEGKMLVNQEEKALSTSRK* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2889 571 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 9 547 - -
Ahy1g2889 571 SMART ultradead3 142 365 IPR014001 -
Ahy1g2889 571 CDD SF2_C_DEAD 399 528 - -
Ahy1g2889 571 MobiDBLite consensus disorder prediction 64 93 - -
Ahy1g2889 571 CDD DEADc 134 355 - -
Ahy1g2889 571 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Ahy1g2889 571 Pfam DEAD/DEAH box helicase 147 340 IPR011545 GO:0003676|GO:0005524
Ahy1g2889 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 414 558 IPR001650 -
Ahy1g2889 571 Pfam Helicase conserved C-terminal domain 417 519 IPR001650 -
Ahy1g2889 571 SMART helicmild6 438 519 IPR001650 -
Ahy1g2889 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 541 IPR027417 -
Ahy1g2889 571 MobiDBLite consensus disorder prediction 371 392 - -
Ahy1g2889 571 Gene3D - 396 552 IPR027417 -
Ahy1g2889 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 354 IPR014001 -
Ahy1g2889 571 Gene3D - 98 356 IPR027417 -
Ahy1g2889 571 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 9 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2889 Ahy-Chr1 109742836 109751603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2889 124 547 Eukaryotic Initiation Factors Gene Family AT3G19760 24.941 8.96e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2889 - - aip:107613119 1037.33