Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2882 ATGAAGCCTCTTTGGTTACCTGCCAGTACCAGTGGATCTGTTGTAGCAACCTTACTCCTGTTACTGTTCTCTTGCACCACATTCACTTCCACAGCTTATGATGCACTTGATCCAACTGCCAATATAACAATCAAATGGGATGTCATAACCTGGACTGGAGATGGCTATATTGCTGTTGTTACAATGTACAACTTTCAACAATATCGCCATATCCAGGCGCCGGGATGGACCTTAGGGTGGACATGGGCGAAAAGGGAAGTAATTTGGAACATGCTTGGAGGCCAAACCACAGAACAAGGGGATTGTTCAAGGTTCAAAGGGAGCATCCCACATTGCTGCAAGAAAGATCCAACTGTAGTGGATTTACTGCCAGGAGCACCTTACAATCAGCAGGTAGCAAATTGCTGCAAAGGCGGCGTCTTGAATGCGTGGGCTCAGGACCCTGAAACTGCAGTTGCTTCGTTCCAACTCATTGTCGGTTCGGCTGGAACAACTAACAAAACTGTTAGAGTGCCAAAAAATTTCACCTTGAGAGTGCCCGGTCCAGGTTATACTTGTGGCCCTGCAAAGATTGTGAGGCCAACAAAATTTAGCACCAATGACAAGAGGAGAACCACTCAAGCCATGATGACTTGGAATGTTACCTGCACATATTCTCAATTCCTGGCTCAAAAGACTCCAACTTGCTGTGTTTCTCTCTCATCATTCTATAATAATACAATAGTCAATTGCCCAACTTGTACCTGTGGCTGTCAAAACAAAACAGAACCTGGAAGCTGTGTAGATCCAAAGTCTCCACATTTAGCTTCAGTCGTTTCACCACCAAGCAGAGCTTTAAATCCACCTCTAGTTCAGTGTACAAGCCATATGTGTCCGATTCGAGTGCACTGGCACGTCAAGCTCCAATACAAAGAGTACTGGAGGATCAAGATCACAGTCACAAATTTCAATTACAGAATGAACTATTCACAATGGAACCTTGTTGTTCAGCATCCCAATTTTGACAATGTGACACAGGTTTTCAGCTTTAATTACAAGCCACTGACACCTTATGAGGGCTTAAATGATACAGGTATGCTGTGGGGTGTGAAGTTCTACAATGATTTGTTGGTTTCAGCTGGAGCAGTTGGGAATGTGCAATCAGAACTGTTATTTAGGAAAGACAAATCAAGCTTCACATTTGATAAAGGATGGGCATTCCCAAGAAGGATCTATTTCAATGGAGACAACTGTGTCATGCCACCTCCAGATGCATATCCTTGGCTACCAAATGCAAGTTCAACACTAGTTCTCTCTTTGCTAAGTTCTCTCACTCGGATTCTGGCTTCTTTTCTTGTCTTATCATTTACATGTTAA 1356 0.4344 MKPLWLPASTSGSVVATLLLLLFSCTTFTSTAYDALDPTANITIKWDVITWTGDGYIAVVTMYNFQQYRHIQAPGWTLGWTWAKREVIWNMLGGQTTEQGDCSRFKGSIPHCCKKDPTVVDLLPGAPYNQQVANCCKGGVLNAWAQDPETAVASFQLIVGSAGTTNKTVRVPKNFTLRVPGPGYTCGPAKIVRPTKFSTNDKRRTTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCTCGCQNKTEPGSCVDPKSPHLASVVSPPSRALNPPLVQCTSHMCPIRVHWHVKLQYKEYWRIKITVTNFNYRMNYSQWNLVVQHPNFDNVTQVFSFNYKPLTPYEGLNDTGMLWGVKFYNDLLVSAGAVGNVQSELLFRKDKSSFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSTLVLSLLSSLTRILASFLVLSFTC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2882 451 PIRSF COBRA 8 451 IPR006918 GO:0010215|GO:0031225
Ahy1g2882 451 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Ahy1g2882 451 PANTHER COBRA-LIKE PROTEIN 12 447 - -
Ahy1g2882 451 Pfam COBRA-like protein 56 219 IPR006918 GO:0010215|GO:0031225
Ahy1g2882 451 PANTHER PROTEIN COBRA 12 447 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2882 Ahy-Chr1 109578494 109582204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2882 15 445 COBRA Gene Family AT3G02210 75.289 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2882 - - gmx:100811581 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2042 11 129819608 129823248 Ahy1g2882 1 109578494 109582204 hybridization
Ahy1g2882 1 109578494 109582204 Ahy20g2418 20 129221601 129232082 PCT
Ahy1g2882 1 109578494 109582204 Ahy10g1928 10 104881960 104885179 PCT
Ahy20g2418 20 129221601 129232082 Ahy1g2882 1 109578494 109582204 PCT
Ahy10g1928 10 104881960 104885179 Ahy1g2882 1 109578494 109582204 PCT