Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2880 ATGGAATCTTCTTGGGATTATGTTACTGAAGAAGAAAAGGGGTATGTCTCCAACGATGCACTTTCTGCTGCACCTCCTCCTCCTCCTAGTACCCTTTTGAGAAGCAAAAGTTCCTTCCTTGGATGGGAACTGAAAACCCCATGTTCTAGCTTTGACAATCAATGTTTTGAAGAACTTGGTTTCCCTGAACTGTTGGGGAAACCATTGTTTAATGATCTAATTGGAGGTAGTGGACATGGTGGAAGAATCACAAGTAGTAGTAATAGTACTATTACAACTACTACTACTGTTGTGGACTCCAGTAGTGGCCGTGATTCCCTCATTGATTTGAAGCTTGGAAGATTTGCTGATCATGCTGATGTTAATGTTGCATCATTTTCCAAAGGAGCACCTGTTTTGTGTTCTTCTGTGTCGTCCACGGCCCCGAAGAGACCGCGAGGCTCTTTGGGTTTGCACTCGCAGACTTCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGACACAAAGTTTGTGAGGTTCATTCCAAGACTGCCGTAGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGATGATGGTAAACGCAGCTGTCGCAAACGCCTTGCAGGACACAATGAGCGGCGAAGAAAACCACAAGCAGGTATTCACTCTGGAAAGGCTGCGAGGTTGCTTCATCCATGTGGTAGTGATAGCAGATTCCAGGGAACCATGCTATCGTCGGCATCTTTCATCTCCTCGGATTCAGATAAATACGGAATGAGTAGCTTCTGGAAACCCGGTAAAGCAGAACACGGGTCCGATTTTTGGCATCCTGAGTCAAGATCTCTTTTCCCTTCATACAATGGAAAACAATTTCCCTTTCTTCATGAGAGTGGTGCTACATCCACTACTACCGAAAGCATCTTCTATGAAAACAATAACCAATATAAGCATGTCATTGCGGCCCAACATCCAGGGTCAAGACCACTATTTCAGAACAGCTCCTTAGGAAGTGACGACTTCAATCTTTTCGATACATCATCAACTGTTCAAGGATTGTCGGGAATTTCGGACTCGTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAGTCGTCCGGAATTCCCTTTGTTCCCCCCATGATTAGTCCAAGCAGCCACAGCCATCCTTGCAGCATAAGTCAAGTCTCTGAAAAGATAGGAATGAGCTCGCAAACTTCTTCGTGCCGAGTGTACGATAGGTTTCCATCGGCATTGAATCCTGCAAGTGGAAGCCAGCTTAGTCCTATACTTATATCAGACAATAACAATATTGTCAACTTCGAAATGGCAGACCGGATTTTCCAAGGTTCAGACTTTGTTAATGCTAGAGATCGTCTTTCATGTGAAGATGTTGCAACAATTGACTTGCTACAGCTGTCGTCGCAGCTTCAACGAGTCGAGCATCAAAGGCAGTCCTTGCAGGTTAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTAA 1566 0.4444 MESSWDYVTEEEKGYVSNDALSAAPPPPPSTLLRSKSSFLGWELKTPCSSFDNQCFEELGFPELLGKPLFNDLIGGSGHGGRITSSSNSTITTTTTVVDSSSGRDSLIDLKLGRFADHADVNVASFSKGAPVLCSSVSSTAPKRPRGSLGLHSQTSYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQAGIHSGKAARLLHPCGSDSRFQGTMLSSASFISSDSDKYGMSSFWKPGKAEHGSDFWHPESRSLFPSYNGKQFPFLHESGATSTTTESIFYENNNQYKHVIAAQHPGSRPLFQNSSLGSDDFNLFDTSSTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPFVPPMISPSSHSHPCSISQVSEKIGMSSQTSSCRVYDRFPSALNPASGSQLSPILISDNNNIVNFEMADRIFQGSDFVNARDRLSCEDVATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2880 521 Pfam SBP domain 158 231 IPR004333 GO:0003677
Ahy1g2880 521 Gene3D - 150 219 IPR036893 GO:0003677|GO:0005634
Ahy1g2880 521 SUPERFAMILY SBT domain 157 235 IPR036893 GO:0003677|GO:0005634
Ahy1g2880 521 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Ahy1g2880 521 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 521 IPR044817 GO:0003677
Ahy1g2880 521 PANTHER 1 PROTEIN, PUTATIVE-RELATED 39 521 - -
Ahy1g2880 521 Coils Coil 489 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2880 Ahy-Chr1 109532111 109535825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2880 108 245 SBP-box Gene Family AT1G69170 60.145 2.22e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy1g2880 SBP 5.30E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2880 - - adu:107468861 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2044 11 129945917 129949667 Ahy1g2880 1 109532111 109535825 hybridization