Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2878 ATGGGAAGGGGTAAGGTTGAGTTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACATTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAGGCTTATGAACTCTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCATCTTCTCTAATCGCGGCAAACTCTACGAGTTTAGCAGCACTTCTAGCATGATGAGAACTCTGGAGAAGTATCACAAGTATAGTTACAGTGCTCTCGAGTCTGGTCGACCAATCAGTGACACGCAGACAAATTACGAGGATTATAAGAGACTAAAAGACAATGTAGAAGCTCTCCAACGTTCTCAGAGGAACCTACTGGGGGAAGATCTTGCTCAAATGAATACAACTGAGCTGGACCAGCTTGAGAATCAACTTGAGGTAGCACTCAAGAATATTAGGTCAACTAAGACTCAGTTTATGCTTGACCAACTTGCTGATCTTCAGAACCGGGAAATGGCGCTTGTTGAAACAAATAATGTGCTAAGGAGTAAGTTAGAAGAACTGAATAATCACTCATCAGAAGTGGCTTTGGAAGACGTGGGCCCCACCATTCACTACAACCGCTTTCCTTCTCAATCAGATCACCCATTTTTCCAACCTGTTCTAGGAGTTAATTCCAACTTGCAAATTGGATACAATCAAAGCATTCATCATGATGTGAACGTTGGAGCTTCATCCTTAACTATGCAGGGATTCGTCTCTGGGTGGATGCTTTGA 735 0.4272 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMRTLEKYHKYSYSALESGRPISDTQTNYEDYKRLKDNVEALQRSQRNLLGEDLAQMNTTELDQLENQLEVALKNIRSTKTQFMLDQLADLQNREMALVETNNVLRSKLEELNNHSSEVALEDVGPTIHYNRFPSQSDHPFFQPVLGVNSNLQIGYNQSIHHDVNVGASSLTMQGFVSGWML* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2878 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy1g2878 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy1g2878 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy1g2878 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy1g2878 244 Coils Coil 117 144 - -
Ahy1g2878 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy1g2878 244 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy1g2878 244 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy1g2878 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ahy1g2878 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy1g2878 244 Coils Coil 84 114 - -
Ahy1g2878 244 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Ahy1g2878 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Ahy1g2878 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy1g2878 244 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 226 - -
Ahy1g2878 244 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2878 Ahy-Chr1 109474423 109482226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2878 1 244 MADS-box Gene Family AT5G15800 51.136 2.69e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy1g2878 K-box 1.80E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2878 K09264 - gmx:100804810 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2047 11 130139630 130147632 Ahy1g2878 1 109474423 109482226 hybridization